Burkholderia Genome Database: A database for Burkholderia species genomes Burkholderia Genome Database

NEWS

May 27, 2009

Burkholderia multivorans ATCC17616 was mistakenly omitted from drop-down list on the BLAST search page. This strain has now been added.

April 22, 2009

42 new annotation updates.

Please note the recent Burkholderia Genome Database publication in Bioinformatics. When acknowledging use of the database, please cite the article by Winsor et al. (2008; PMID:18842600) and not the web site URL.

PFAM predictions for all genomes have been updated using a Reversed Position Specific Blast (v.2.2.18) search of the NCBI database of position-specific scoring matrices for sequences of known PFAM classification (based on PFAM v.22.0).

The advanced search page now has an option for limiting the size (bp) of the genes returned. For example, you can now only return genes which are greater than 500 bp.

Bugs fixed: Protein and intergenic sequence download links are now working. Combined search of Pseudomonas and Burkholderia Genome Databases has been fixed.

(More...)

ABOUT

Database Overview

Cystic Fibrosis

Burkholderia cepacia complex


GENOME PROJECTS

Who is involved?

Burkholderia Genome Projects

Related Links


ACKNOWLEDGEMENT

Please acknowledge use of this data and database as we describe here.


SITE MAP

Go here to see a site directory.


The Burkholderia cepacia complex (Bcc) is a group of genetically distinct, phenotypically similar, Gram-negative bacteria noted for their environmental versatility and its ability to cause disease in cystic fibrosis patients and individuals with compromised immune systems. Members of this group colonize a wide range of ecological niches including the plant rhizosphere, soil, river water as well as urban environments considered to be due to the plasticity and metabolic adaptability of their genomes.

The aim of this database is to provide a resource for researchers to perform multi-genome comparisons of strains within the Burkholderia cepacia complex and to other Burkholderia genomes. In addition to the publicly available genome annotations downladed from NCBI, this website provides ortholog and subcellular localization predictions. We welcome input from the Burkholderia research community on how to improve this database and to provide annotation update submissions based on peer-reviewed publications. A better understanding of the factors responsible for virulence in these strains will help researchers identify vaccine targets and drug candidates.

View annotations and analyses for Burkholderia spp. genomes using the Database Search or go directly near the start of each genome (available in 2 formats):

Burkholderia ambifaria strain MC40-6 [ Gene Card View ] [ GBrowse View ]
Burkholderia cenocepacia strain AU 1054 [ Gene Card View ] [ GBrowse View ]
Burkholderia cenocepacia strain HI2424 [ Gene Card View ] [ GBrowse View ]
Burkholderia cenocepacia strain J2315 [ Gene Card View ] [ GBrowse View ]
Burkholderia cenocepacia strain MC0-3 [ Gene Card View ] [ GBrowse View ]
Burkholderia cepacia strain AMMD [ Gene Card View ] [ GBrowse View ]
Burkholderia mallei strain ATCC 23344 [ Gene Card View ] [ GBrowse View ]
Burkholderia mallei strain NCTC 10229 [ Gene Card View ] [ GBrowse View ]
Burkholderia mallei strain NCTC 10247 [ Gene Card View ] [ GBrowse View ]
Burkholderia mallei strain SAVP1 [ Gene Card View ] [ GBrowse View ]
Burkholderia multivorans strain ATCC 17616 [ Gene Card View ] [ GBrowse View ]
Burkholderia phymatum strain STM815 [ Gene Card View ] [ GBrowse View ]
Burkholderia pseudomallei strain 668 [ Gene Card View ] [ GBrowse View ]
Burkholderia pseudomallei strain 1106a [ Gene Card View ] [ GBrowse View ]
Burkholderia pseudomallei strain 1710b [ Gene Card View ] [ GBrowse View ]
Burkholderia pseudomallei strain K96243 [ Gene Card View ] [ GBrowse View ]
Burkholderia sp. strain 383 [ Gene Card View ] [ GBrowse View ]
Burkholderia thailandensis strain E264 [ Gene Card View ] [ GBrowse View ]
Burkholderia vietnamiensis strain G4 [ Gene Card View ] [ GBrowse View ]
Burkholderia xenovorans strain LB400 [ Gene Card View ] [ GBrowse View ]



We thank Cystic Fibrosis Foundation Therapeutics, Inc (CFFT) for critical funding support for the Burkholderia Genome Database.