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               BPSL0007               
Key to diagram


View in GBrowse: (?) 19 putative orthologs Acknowledgements for this annotation
Gene Information
Strain Burkholderia pseudomallei K96243 (Tax ID: 272560) Replicon Chromosome1(3529 genes, 4074542 bp) [ RefSeq ]
Gene name gspD  Alternate Gene Names  
Locus tag BPSL0007 (View 1 update) GenBank Identifier (GI) 53717646 (Precomputed BLAST results at BLINK )
Genomic location 8395 - 10668 (+) Feature type CDS 
Burkholderia Ortholog Group Explanation of Orthologous Groups
Product Information
Product Name general secretory pathway protein D
Alternate Product Names
Subcellular localization
Outer Membrane (Class 3Explanation of Localization Confidence)
Alternate Annotations and Cross-References
RefSeq YP_106632.1
GI 53717646
Entrez 3091427
GBrowse Click here for a GBrowse View of this and other annotations.
Gene Ontology (GO)
GO Accession GO Term Evidence
Molecular Function
GO:0008565 protein transporter activity IEA
Biological Process
GO:0015628 protein secretion by the type II secretion system IEA
Cellular Component
GO:0015627 type II protein secretion system complex IEA
COG Predictions
COG PredictionExplanation of COG predictions
COG Accession Description Category
COG1450 PulD, Type II secretory pathway, component PulD [Cell motility and secretion / Intracellular trafficking and secretion]. Cell motility and secretion / Intracellular trafficking and secretion
TIGRFAM Prediction
TIGRFAM predictionExplanation of TIGRFAM predictions
Accession Name Function Significance Role Sub Role
TIGR02517 type_II_gspD general secretion pathway protein D 0 Protein fate Protein and peptide secretion and trafficking
Pathways
Pathways Explanation of Pathways Field
Name Database Xref
Bacterial secretion system KEGG bps03070 Computationally Generated
Homology
BLINK Precomputed BLAST results at BLINK
Structure Features
PFAM predictions Explanation of PFAM predictions
Accession Domain Start Stop E-value Release No.
PF03958 Secretin_N, Bacterial type II/III secretion system short domain. 192 262 4e-09 23.0
PF00263 Secretin, Bacterial type II and III secretion system protein. 408 667 2e-58 23.0
 
Comments
Comments Previously sequenced as Burkholderia pseudomallei general secretory pathway protein D GspD SWALL:Q9ZF86 (EMBL:AF110185) (750 aa) fasta scores: E(): 0, 99.86% id in 750 aa. CDS is extended at the N-terminus in comparison to the previously sequenced protein. Similar to Erwinia chrysanthemi general secretion pathway protein D precursor OutD SWALL:GSPD_ERWCH (SWALL:P31700) (712 aa) fasta scores: E(): 2.5e-21, 33.23% id in 680 aa
Microarray Expression Data
NCBI GEO Link
Sequence data
Upstream 500 BP Region ACGAGCGGATTCACCTTCTGATACTTCGCGGCTTCGTCGTAGCAGTCGGCGCGCGCCGGTGCGCTGGCGAACCATGCGCCGGCGGCAAACATCGCGACAA TAACGAATCGCTTCTCCATCTGGAAATGAACCGGTGAATTGTTTTACGCTTCGCAGAAGGCCGGGAAAACCCGCACGCGCTTTTCGCGCGACGGCGCTCC GGCCGCCCGTATCATACCTGCAACCGAACGGTTCGCCACGCGGGAGGCCATTCGGTTGGTTCGGACTACGGCGTTTGCCAAGCACGTTTATACCGCATTA TCGTGCCGATGCTTGCCGAAACTTCGCATGTGAAAACTTACGTGCGGCATACGCTGTCGATTTTTTTATGGCGGAAGTGAGACAGTTCTCGGTTCAATGT GATATTTCGGACATGAAAAACTGCTAATGTCTGTTTTTTTGATCCTGACCTTACGTAATACCATCGGAAACGGCCGCCGCCGGCATCGATCCATTACTCC

BLAST search against this genome or other genomes in database
Need more than 500 BP? Try our sequence retrieval tool or view intergenic regions in GBrowse.

DNA Sequence ATGACAAGAACTCGCTTTGCTTTGCGGCGCGTCGCAACGGCGCTCGTCGTCGCCGGAATTGTCGCCGCGCAGGCCGCTCACGCTCAGGTCACGCTCAATT TCGTCAATGCGGACATCGATCAGGTCGCCAAGGCGATCGGCGCCGCGACGGGCAAGACGATCATCGTCGATCCTCGCGTCAAGGGGCAGCTGAACCTCGT CGCCGAGCGTCCGGTGCCCGAAGATCAGGCGCTGAAGACGCTGCAGTCCGCGCTGCGGATGCAGGGCTTCGCGCTCGTCCAGGATCACGGCGTCCTGAAG GTCGTGCCGGAAGCCGACGCGAAGCTGCAGGGCGTGCCGACCTACATCGGCAACGCGCCGCAGGCGCGCGGCGACCAGGTGGTCACGCAAGTGTTCGAGC TGCGCAACGAATCGGCGAACAACTTGCTTCCGGTGCTGCGCCCGCTGATCTCGCCGAACAACACGATCACCGCGTATCCGGCCAACAACACGATCGTCGT CACCGATTACGCGGACAACGTGCGCCGGATCGCGCAGATCATCGCGGGCGTCGACAGCGCGGCGGGCTCGCAAGTCGCCGTCGTGCCGCTCAAGAACGCG AATGCGATCGACATCGCCGCGCAACTGACGAAGCTGCTCGACCCGGGCGCGATCGGCAACACCGACGCGACGCTGAAAGTCACCGTGCAGGCCGATCCGC GAACCAATGCGCTGCTGCTGCGCGCATCGAACGCGCAGCGCCTCGCCACGGCGAAGAAGATCGCGCAGCAGCTCGACGCGCCGAGCGGTGTGCCGGGCAA CATGCACGTCGTGCCGCTGCGCAATGCGGAAGCGGTGAAGCTCGCGAAGACGCTGCGCGGGATGCTCGGCAAGGGCGGCGGCGAAAGCGGCTCGTCGGCG AGCTCGAACGACGCGAACGCGTTCAATCAGGGCGGCTCGCAAAGCGGCTCGAACTTCTCGACGGGCGCATCGGGCACGCCGCCGCTGCCGTCGGGGCTGT CGTCGAATTCATCGGGCGGCGCGGGCGGCACGACGGGCGGCGGCGGGCTCGGCAATGCGGGGCTGCTCGGCGGCGACAAGGACAAGGGCGACGACAACCA GCCGGGCGGAATGATCCAGGCGGACGCGGCGTCGAATTCGCTCATCATCACCGCGTCGGATCCGGTATACCGGAATCTGCGGGCCGTGATCGACCAGCTC GATGCGCGGCGCGCGCAGGTGTACATCGAGGCGCTGGTCGTCGAGCTGCAGGCGACGACCAGCGCCAATCTGGGCATTCAATGGCAGGTTGCGAACAACG CGCTCTATGCGGGCACCAATCTGGTGACGGGGCAGACCGGCCTCGGCAACAGCATCGTCAATCTGACGGCGGGAGCCGTGACCAATCCGGGCGGCACGCT GGGGTCGCTGGGCTCGATCACGAACGGCCTGAACATCGGTTGGTTGCACAACATGTTCGGCGTGCAGGGTTTGGGCGCCTTGCTGCAGTTCTTCGCGGGC TCGAGCGACGCAAACGTGCTGTCGACGCCGAACCTCGTCACGCTGGACAATGAGGAGGCGAAGATCGTGGTCGGCCAGAACGTGCCGATTCCGACGGGCT CGTACTCGAACCTGACGAGCGGCACGACCGCCAACGCGTTCAACACATACGACCGGCGCGATGTCGGCCTGACGCTGCACGTGAAGCCGCAAATCACCGA GGGCGGCATTCTGAAGCTGCAGCTGTACACGGAAGATTCCGCGGTGGTGCCCGGCACGAACACGACGTCGGCCAATTCGCCCGGGCCGACGTTCACGAAG CGCTCGATCCAGTCGACGGTGCTGGCGGACAACGGCGAGATCATCGTGCTCGGCGGGTTGATGCAGGATAACTACCAGGTATCGAATACGAAGGTGCCGC TCCTCGGCGACATTCCGTGGATCGGCCAGCTGTTCCGCTCCGAGGGCAAGACGCGCCAGAAGACGAACCTGATGGTGTTCCTGCGCCCCGTGATCATCAA CGACCGCGAGACCGCGCAGGCGGTGACCTCGAACCGCTACGACTACATCCAGGGCGTGACGGGCGCGTACAAGTCGGACAACAACGTCATTCGCGACAAG GACGACCCGATCGTCCCGCCGATGCCGCTCGGCCCGAGCCAGGGCGGCTCGCCCGCGATGAACCTGTTCGACCTCGACAAGATGCGGCGCCAGCAGCTCG CTCCGCCCGCGCCCGCCAGCGCGCCGGCGGCGGCGAGCGACGCCGGCACCGCGTCGCCGGGAGCCCGTCCGTGA

BLAST search against this genome or other genomes in database


Downstream 500 BP region Click here to view the nucleotide sequence of the region 500 BP downstream of this gene.

Protein Sequence MTRTRFALRRVATALVVAGIVAAQAAHAQVTLNFVNADIDQVAKAIGAATGKTIIVDPRVKGQLNLVAERPVPEDQALKTLQSALRMQGFALVQDHGVLK VVPEADAKLQGVPTYIGNAPQARGDQVVTQVFELRNESANNLLPVLRPLISPNNTITAYPANNTIVVTDYADNVRRIAQIIAGVDSAAGSQVAVVPLKNA NAIDIAAQLTKLLDPGAIGNTDATLKVTVQADPRTNALLLRASNAQRLATAKKIAQQLDAPSGVPGNMHVVPLRNAEAVKLAKTLRGMLGKGGGESGSSA SSNDANAFNQGGSQSGSNFSTGASGTPPLPSGLSSNSSGGAGGTTGGGGLGNAGLLGGDKDKGDDNQPGGMIQADAASNSLIITASDPVYRNLRAVIDQL DARRAQVYIEALVVELQATTSANLGIQWQVANNALYAGTNLVTGQTGLGNSIVNLTAGAVTNPGGTLGSLGSITNGLNIGWLHNMFGVQGLGALLQFFAG SSDANVLSTPNLVTLDNEEAKIVVGQNVPIPTGSYSNLTSGTTANAFNTYDRRDVGLTLHVKPQITEGGILKLQLYTEDSAVVPGTNTTSANSPGPTFTK RSIQSTVLADNGEIIVLGGLMQDNYQVSNTKVPLLGDIPWIGQLFRSEGKTRQKTNLMVFLRPVIINDRETAQAVTSNRYDYIQGVTGAYKSDNNVIRDK DDPIVPPMPLGPSQGGSPAMNLFDLDKMRRQQLAPPAPASAPAAASDAGTASPGARP

BLAST search against this genome or other genomes in database
View precomputed BLAST results against all genomes at NCBI BLINK
Operons/Regulons
Type operon
Genes
GeneProduct
gspD general secretory pathway protein D
gspE general secretory pathway protein E
gspF general secretory pathway protein F
Evidence Computationally Predicted
PubMed 18988623
Cross-Reference DOOR 122680
References
PubMed  
We thank Cystic Fibrosis Foundation Therapeutics, Inc. for critical funding support for the Burkholderia Genome Database.



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Burkholderia Genome Database Version 1.0