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               BTH_I0007               
Key to diagram


View in GBrowse: (?) 19 putative orthologs Acknowledgements for this annotation
Gene Information
Strain Burkholderia thailandensis E264 (Tax ID: 271848) Replicon Chromosome1(3343 genes, 3809201 bp) [ RefSeq ]
Gene name   Alternate Gene Names  
Locus tag BTH_I0007 (View 1 update) GenBank Identifier (GI) 83720377 (Precomputed BLAST results at BLINK )
Genomic location 8351 - 10585 (+) Feature type CDS 
Burkholderia Ortholog Group Explanation of Orthologous Groups
Product Information
Product Name general secretion pathway protein D
Alternate Product Names
Subcellular localization
Outer Membrane (Class 3Explanation of Localization Confidence)
Alternate Annotations and Cross-References
RefSeq YP_440567.1
GI 83720377
Entrez 3847509
GBrowse Click here for a GBrowse View of this and other annotations.
Gene Ontology (GO)
GO Accession GO Term Evidence
Molecular Function
GO:0008565 protein transporter activity IEA
Biological Process
GO:0015628 protein secretion by the type II secretion system IEA
Cellular Component
GO:0015627 type II protein secretion system complex IEA
COG Predictions
COG PredictionExplanation of COG predictions
COG Accession Description Category
COG1450 PulD, Type II secretory pathway, component PulD [Cell motility and secretion / Intracellular trafficking and secretion]. Cell motility and secretion / Intracellular trafficking and secretion
TIGRFAM Prediction
TIGRFAM predictionExplanation of TIGRFAM predictions
Accession Name Function Significance Role Sub Role
TIGR02517 type_II_gspD general secretion pathway protein D 0 Protein fate Protein and peptide secretion and trafficking
Pathways
Pathways Explanation of Pathways Field
Name Database Xref
Bacterial secretion system KEGG bte03070 Computationally Generated
Homology
BLINK Precomputed BLAST results at BLINK
Structure Features
PFAM predictions Explanation of PFAM predictions
Accession Domain Start Stop E-value Release No.
PF03958 Secretin_N, Bacterial type II/III secretion system short domain. 185 255 2e-08 23.0
PF00263 Secretin, Bacterial type II and III secretion system protein. 401 653 3e-57 23.0
 
Comments
Comments identified by match to protein family HMM PF00263
identified by match to protein family HMM PF00263; match to protein family HMM PF03958; match to protein family HMM TIGR02517
Sequence data
Upstream 500 BP Region CTTCGCGGCTTCGTCGTAACAGTCGGCGCGAGCAGGTGCGCTGGCGAACCATGCGCCGGCGGCAAACATCGCGACAATGACGAACTGCTTCTCCATCTGG AAATGAACCGGTGAATTGTTTTACGCTTCGCAGAAGGCCGGGAAAACCCGCACGCGCTTTTCGCGCGATGCCGCTCCGGCCGCCCGTATCATACCTGCAA CCGAACGGTTCGCCACGAGCGGAGGCTATCCGGTTGGTTTGGACTACGGCGTTTGTCAAGCACGTTTATACCGCATTATCGTGCCGGTGCTTGTCGAAAC TTCGCATGCGAAAACTTACGTGCGGCATACGCATTCGATTTTTTTTATGGCGTAAGTGAGACAGTTCTCGGTTCAATGTGATATTTCGGACATGAAAAAC TGCTAATGTCTGCTTTTTTGATCCTGACCTTACGTAATACCATCGGAAACGGCCGCCGCCGGCATCGATCCATCAATCCATGACAAGAACTCGCTTTGCT

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DNA Sequence TTGCGGCGCGTCGCAACGGCGCTCGTCGTCGCCGGAATTGTCGCCGCGCAGGCCGCTCACGCTCAGGTCACGCTCAATTTCGTCAATGCGGACATCGACC AGGTCGCGAAGGCGATCGGCGCCGCGACGGGCAAGACGATCATCGTCGATCCGCGCGTCAAGGGGCAGTTGAATCTCGTCGCCGAGCGCGCCGTGCCGGA AGATCAGGCATTGAAGACGCTGCAGTCCGCGCTCCGGATGCAAGGTTTCGCGCTCGTCCAGGATCACGGCGTCCTGAAGGTCGTGCCGGAAGCCGACGCG AAGCTGCAGGGCGTGCCGACCTACATCGGCAACACGCCGCAGGCGCATGGCGATCAGGTCGTCACGCAAGTGTTCGAACTGCGCAACGAGTCGGCGAACA ACTTGCTTCCGGTGCTGCGCCCGCTGATCTCGCCGAACAACACGATCACCGCGTATCCGGCCAACAACACGATCGTCGTCACCGATTACGCGGACAACGT GCGCCGGATCGCGCGGATCATCGCGGGCGTCGACAACGCGGCAGGCGCGCAGGTTGCCGTCGTGCCGCTGAAGAACGCGAACGCGATCGACATCGCCGCG CAGCTCACGAAGCTGCTCGACCCGGGCGCGATCGGCAACACCGACGCGACGCTGAAAGTCACCGTGCAGGCCGATCCGCGTACCAACGCGCTGCTTTTGC GCGCATCGAACACGCAGCGCCTCGCCGCGGCGAAGAAGATCGCGCAGCAGCTCGACGCGCCAAGCGGCGTGCCGGGCAACATGCATGTCGTGCCGTTGCG CAACGCCGATGCGGTGAAGCTCGCGAAGACGCTGCGCGGGATGCTCGGCAAGGGCGGCGGCGAAAGCGGCTCGTCGGCGAGCTCGAACGACGCGAATGCG TTCAATCAGGGCGGCTCGCAGAGCGGCTCGAATTTCTCGACGGGCACTTCGGGCACGCCGCCGCTGCCGTCGGGGCTGTCGTCCGGCTCGTCGGGCGGCA TGGGCGGCACGATGGGAGGCGGCGGGCTCGGTACCGCCGGCCTGCTGGGCGGCGACAAGGACAAGAGCGACGAGAATCAGCCGGGCGGCATGATCCAGGC CGACTCGGCGACGAATTCGCTCATCATCACCGCGTCGGACCCGGTGTACCGGAACCTGCGTGCGGTGATCGACCAGCTCGATGCGCGGCGCGCGCAGGTG TACATCGAGGCGCTTGTCGTCGAGCTGAACTCGACGACGAACGCGAACCTCGGGATTCAGTGGCAGGTCGCCAACAACGCGCTCTATGCAGGCACGAACC TGCCGACGGGAGGCGTGGGCGGCGGCAACAGCATCGTCGACCTGACAACCCGGGCCGCGACGTCGGCCGTCGGTGCGATCAGCACGCTCACGCCGGGGCT CAACATCGGCTGGTTGCACAACATGTTCGGCATCCAGGGGCTCGGCGGGTTGCTGCAGTATTTTTCCGGCGTGAGCGACGCGAACGTGCTGTCGACGCCG AACCTCGTGACGCTCGACAATGAGGAAGCGAAGATCGTCGTCGGCCAGAACGTGCCGATTCCGACCGGCTCGTATTCGAATCTGACGAGCGGCAACACGA ACAATGCGTTCAACACATACGACCGGCGCGATGTCGGCCTGACGCTGCACGTGAAACCGCAGATCACCGAAGGCGGGATTCTGAAGCTGCAGCTGTACAC GGAGGACTCCTCGGTCGTGAATACCACGGTCAACAACCAGTCCGGCCCGACGTTCAACAAGCGCTCGATCCAGTCGACCGTGCTGGCCGACAACGGCGAG ATCATCGTGCTCGGCGGCCTGATGCAGGACAACTATCAGGTTTCGAACAGCAAGGTGCCGCTGCTCGGCGACATTCCGTGGATCGGCCAGTTGTTCCGCT CCGAAGGCAAGACGCGCCAGAAGACGAACCTGATGGTGTTCCTGCGTCCCGTGATCATCACCGATCGCGAGACCGCGCAGGCGGTGACCTCGAACCGCTA CGACTACATCCAGGGCGTGACGGGCGCGTACAAGTCGGACAACAACATCATCCGCGACAAGGACGACCCCGTCGTCCCGCCGATGCCGCTCGGCCCGAGC CAGGGCGGCTCGCCCGCGATGAACCTGTTCGACATCGACAAGATGCGGCGCCAGCAGCTCGTTGCGCCCGCGCCCGCCAGCGCGCCCGCGGCGGCGAGCG ACGCCGGCGCCGCATCGTCGGGAGCCCGTCCGTGA

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Downstream 500 BP region Click here to view the nucleotide sequence of the region 500 BP downstream of this gene.

Protein Sequence MRRVATALVVAGIVAAQAAHAQVTLNFVNADIDQVAKAIGAATGKTIIVDPRVKGQLNLVAERAVPEDQALKTLQSALRMQGFALVQDHGVLKVVPEADA KLQGVPTYIGNTPQAHGDQVVTQVFELRNESANNLLPVLRPLISPNNTITAYPANNTIVVTDYADNVRRIARIIAGVDNAAGAQVAVVPLKNANAIDIAA QLTKLLDPGAIGNTDATLKVTVQADPRTNALLLRASNTQRLAAAKKIAQQLDAPSGVPGNMHVVPLRNADAVKLAKTLRGMLGKGGGESGSSASSNDANA FNQGGSQSGSNFSTGTSGTPPLPSGLSSGSSGGMGGTMGGGGLGTAGLLGGDKDKSDENQPGGMIQADSATNSLIITASDPVYRNLRAVIDQLDARRAQV YIEALVVELNSTTNANLGIQWQVANNALYAGTNLPTGGVGGGNSIVDLTTRAATSAVGAISTLTPGLNIGWLHNMFGIQGLGGLLQYFSGVSDANVLSTP NLVTLDNEEAKIVVGQNVPIPTGSYSNLTSGNTNNAFNTYDRRDVGLTLHVKPQITEGGILKLQLYTEDSSVVNTTVNNQSGPTFNKRSIQSTVLADNGE IIVLGGLMQDNYQVSNSKVPLLGDIPWIGQLFRSEGKTRQKTNLMVFLRPVIITDRETAQAVTSNRYDYIQGVTGAYKSDNNIIRDKDDPVVPPMPLGPS QGGSPAMNLFDIDKMRRQQLVAPAPASAPAAASDAGAASSGARP

BLAST search against this genome or other genomes in database
View precomputed BLAST results against all genomes at NCBI BLINK
Operons/Regulons
Type operon
Genes
GeneProduct
BTH_I0007 general secretion pathway protein D
BTH_I0008 general secretion pathway protein E
gspF general secretion pathway protein F
Evidence Computationally Predicted
PubMed 18988623
Cross-Reference DOOR 179406
References
PubMed  
We thank Cystic Fibrosis Foundation Therapeutics, Inc. for critical funding support for the Burkholderia Genome Database.



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Burkholderia Genome Database Version 1.0