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               BURPS668_0007               
Key to diagram


View in GBrowse: (?) 19 putative orthologs Acknowledgements for this annotation
Gene Information
Strain Burkholderia pseudomallei 668 (Tax ID: 320373) Replicon Chromosome_I(4013 genes, 3912947 bp) [ RefSeq ]
Gene name gspD  Alternate Gene Names  
Locus tag BURPS668_0007 (View 1 update) GenBank Identifier (GI) 126441466 (Precomputed BLAST results at BLINK )
Genomic location 8386 - 10659 (+) Feature type CDS 
Burkholderia Ortholog Group Explanation of Orthologous Groups
Product Information
Product Name general secretion pathway protein D
Alternate Product Names
Subcellular localization
Outer Membrane (Class 3Explanation of Localization Confidence)
Alternate Annotations and Cross-References
RefSeq YP_001057062.1
GI 126441466
Entrez 4884762
GBrowse Click here for a GBrowse View of this and other annotations.
Gene Ontology (GO)
GO Accession GO Term Evidence
Molecular Function
GO:0008565 protein transporter activity IEA
Biological Process
GO:0015628 protein secretion by the type II secretion system IEA
Cellular Component
GO:0015627 type II protein secretion system complex IEA
COG Predictions
COG PredictionExplanation of COG predictions
COG Accession Description Category
COG1450 PulD, Type II secretory pathway, component PulD [Cell motility and secretion / Intracellular trafficking and secretion]. Cell motility and secretion / Intracellular trafficking and secretion
TIGRFAM Prediction
TIGRFAM predictionExplanation of TIGRFAM predictions
Accession Name Function Significance Role Sub Role
TIGR02517 type_II_gspD general secretion pathway protein D 0 Protein fate Protein and peptide secretion and trafficking
Pathways
Pathways Explanation of Pathways Field
Name Database Xref
Bacterial secretion system KEGG bpd03070 Computationally Generated
Homology
BLINK Precomputed BLAST results at BLINK
Structure Features
PFAM predictions Explanation of PFAM predictions
Accession Domain Start Stop E-value Release No.
PF03958 Secretin_N, Bacterial type II/III secretion system short domain. 192 262 5e-09 23.0
PF00263 Secretin, Bacterial type II and III secretion system protein. 408 667 2e-58 23.0
 
Comments
Comments identified by match to protein family HMM PF00263; match to protein family HMM PF03958; match to protein family HMM TIGR02517
Sequence data
Upstream 500 BP Region ACGAGCGGATTCACCTTCTGATACTTCGCGGCTTCGTCGTAGCAGTCGGCGCGCGCCGGTGCGCTGGCGAACCATGCGCCGGCGGCAAACATCGCGACAA TAACGAATCGCTTCTCCATCTGGAAATGAACCGGTGAATTGTTTTACGCTTCGCAGAAGGCCGGGAAAACCCGCACGCGCTTTTCGCGCGACGGCGCTCC GGCCGCCCGTATCATACCTGCAACCGAACGGTTCGCCACGCGGGAGGCCATTCGGTTGGTTCGGACTACGGCGTTTGCCAAGCACGTTTATACCGCATTA TCGTGCCGATGCTTGCCGAAACTTCGCATGTGAAAACTTACGTGCGGCATACGCTGTCGATTTTTTTATGGCGGAAGTGAGACAGTTCTCGGTTCAATGT GATATTTCGGACATGAAAAACTGCTAATGTCTGTTTTTTTGATCCTGACCTTACGTAATACCATCGGAAACGGCCGCCGCCGGCATCGATCCATTACTCC

BLAST search against this genome or other genomes in database
Need more than 500 BP? Try our sequence retrieval tool or view intergenic regions in GBrowse.

DNA Sequence ATGACAAGAACTCGCTTTGCTTTGCGGCGCGTCGCAACGGCGCTCGTCGTCGCCGGAATTGTCGCCGCGCAGGCCGCTCACGCTCAGGTCACGCTCAATT TCGTCAATGCGGACATCGATCAGGTCGCCAAGGCGATCGGCGCCGCGACGGGCAAGACGATCATCGTCGATCCTCGCGTCAAGGGGCAGCTGAACCTCGT CGCCGAGCGTCCGGTGCCCGAAGATCAGGCGCTGAAGACGCTGCAGTCCGCGCTGCGGATGCAGGGCTTCGCGCTCGTCCAGGATCACGGCGTCCTGAAG GTCGTGCCGGAAGCCGACGCGAAGCTGCAGGGCGTGCCGACCTACATCGGCAACGCGCCGCAGGCGCGCGGCGACCAGGTGGTCACGCAAGTGTTCGAGC TGCGCAACGAATCGGCGAACAACTTGCTTCCGGTGCTGCGCCCGCTGATCTCGCCGAACAACACGATCACCGCGTATCCGGCCAACAACACGATCGTCGT CACCGATTACGCGGACAACGTGCGCCGGATCGCGCAGATCATCGCGGGCGTCGACAGCGCGGCGGGCTCGCAAGTCGCCGTCGTGCCGCTCAAGAACGCG AATGCGATCGACATCGCCGCGCAACTGACGAAGCTGCTCGACCCGGGCGCGATCGGCAACACCGACGCGACGCTGAAGGTCACCGTGCAGGCCGATCCGC GAACCAATGCGCTGCTGCTGCGCGCATCGAACGCGCAGCGCCTCGCCGCGGCGAAGAAGATCGCGCAGCAGCTCGACGCGCCGAGCGGTGTGCCGGGCAA CATGCACGTCGTGCCGCTGCGCAATGCGGAAGCGGTGAAACTCGCGAAGACGCTGCGCGGGATGCTCGGCAAGGGCGGCGGCGAAAGCGGCTCGTCGGCG AGCTCGAACGACGCGAACGCGTTCAATCAGGGCGGCTCGCAAAGCGGCTCGAACTTCTCGACGGGCGCATCGGGCACGCCGCCGCTGCCGTCGGGGCTGT CGTCGAATTCATCGGGCGGCGCGGGCGGCACGACGGGCGGCGGCGGGCTCGGCAATGCGGGGCTGCTCGGCGGCGACAAGGACAAGGGCGACGACAACCA GCCGGGCGGAATGATCCAGGCGGACGCGGCGTCGAATTCGCTCATCATCACCGCGTCGGATCCGGTATACCGGAATCTGCGGGCCGTGATCGACCAGCTC GATGCGCGGCGCGCGCAGGTGTACATCGAGGCGCTGGTCGTCGAGCTGCAGGCGACGACCAGCGCCAATCTGGGCATTCAATGGCAGGTTGCGAACAACG CGCTCTATGCGGGCACCAATCTGGTGACGGGGCAGACCAACCTCGGCAACAGCATCGTCAATCTGACGGCGGGAGCCGTGACCAATCCGGGCGGCACGCT GGGGTCGCTGGGCTCGATCACGAACGGCCTGAACATCGGTTGGTTGCACAACATGTTCGGCGTGCAGGGTTTGGGCGCCCTGCTGCAGTTCTTCGCGGGC TCGAGCGACGCGAACGTGCTGTCGACGCCGAACCTCGTCACGCTGGACAATGAGGAGGCGAAGATCGTGGTCGGCCAGAACGTGCCGATTCCGACGGGCT CGTACTCGAACCTGACGAGCGGCACGACCGCCAACGCGTTCAACACATACGACCGGCGCGATGTCGGCCTGACGCTGCACGTGAAGCCGCAAATCACCGA GGGCGGCATTCTGAAGCTGCAGCTGTACACGGAGGATTCCGCGGTGGTGCCCGGCACGAACACGACGTCGGCCAATTCGCCCGGGCCGACGTTCACGAAG CGCTCGATCCAGTCGACGGTGCTGGCGGACAACGGCGAGATCATCGTGCTCGGCGGGTTGATGCAGGATAACTACCAGGTATCGAATACGAAGGTGCCGC TCCTCGGCGACATTCCGTGGATCGGCCAGCTGTTCCGCTCCGAGGGCAAGACGCGCCAGAAGACGAACCTGATGGTGTTCCTGCGCCCCGTGATCATCAA CGACCGCGAGACCGCGCAGGCGGTGACCTCGAACCGCTACGACTACATCCAGGGCGTGACGGGCGCGTACAAGTCGGACAACAACGTCATTCGCGACAAG GATGACCCGATCGTCCCGCCGATGCCGCTCGGCCCGAGCCAGGGCGGCTCGCCCGCGATGAACCTGTTCGACCTCGACAAGATGCGGCGCCAGCAGCTCG CTCCGCCCGCGCCCGCCAGCGCGCCGGCGGCGGCGAGCGACGCCGGCACCGCGTCGCCGGGAGCCCGTCCGTGA

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Downstream 500 BP region Click here to view the nucleotide sequence of the region 500 BP downstream of this gene.

Protein Sequence MTRTRFALRRVATALVVAGIVAAQAAHAQVTLNFVNADIDQVAKAIGAATGKTIIVDPRVKGQLNLVAERPVPEDQALKTLQSALRMQGFALVQDHGVLK VVPEADAKLQGVPTYIGNAPQARGDQVVTQVFELRNESANNLLPVLRPLISPNNTITAYPANNTIVVTDYADNVRRIAQIIAGVDSAAGSQVAVVPLKNA NAIDIAAQLTKLLDPGAIGNTDATLKVTVQADPRTNALLLRASNAQRLAAAKKIAQQLDAPSGVPGNMHVVPLRNAEAVKLAKTLRGMLGKGGGESGSSA SSNDANAFNQGGSQSGSNFSTGASGTPPLPSGLSSNSSGGAGGTTGGGGLGNAGLLGGDKDKGDDNQPGGMIQADAASNSLIITASDPVYRNLRAVIDQL DARRAQVYIEALVVELQATTSANLGIQWQVANNALYAGTNLVTGQTNLGNSIVNLTAGAVTNPGGTLGSLGSITNGLNIGWLHNMFGVQGLGALLQFFAG SSDANVLSTPNLVTLDNEEAKIVVGQNVPIPTGSYSNLTSGTTANAFNTYDRRDVGLTLHVKPQITEGGILKLQLYTEDSAVVPGTNTTSANSPGPTFTK RSIQSTVLADNGEIIVLGGLMQDNYQVSNTKVPLLGDIPWIGQLFRSEGKTRQKTNLMVFLRPVIINDRETAQAVTSNRYDYIQGVTGAYKSDNNVIRDK DDPIVPPMPLGPSQGGSPAMNLFDLDKMRRQQLAPPAPASAPAAASDAGTASPGARP

BLAST search against this genome or other genomes in database
View precomputed BLAST results against all genomes at NCBI BLINK
Operons/Regulons
Type operon
Genes
GeneProduct
gspD general secretion pathway protein D
gspE general secretory pathway protein E
gspF general secretion pathway protein F
Evidence Computationally Predicted
PubMed 18988623
Cross-Reference DOOR 299122
References
PubMed  
We thank Cystic Fibrosis Foundation Therapeutics, Inc. for critical funding support for the Burkholderia Genome Database.



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Burkholderia Genome Database Version 1.0