Burkholderia Genome Database - Annotation for BamMC406

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BamMC406_0007

Key to diagram

View in GBrowse: (?)

0 putative orthologs

Acknowledgements for this annotation

Overview
Functional Data
Sequence Data
Operons/Regulons
References

Gene Information
Strain	Burkholderia ambifaria MC40-6 (Tax ID: 398577)	Replicon	Chromosome_1(3176 genes, 3443583 bp) [ RefSeq ]
Gene name		Alternate Gene Names
Locus tag	BamMC406_0007 (View 1 update)	GenBank Identifier (GI)	172059073 (Precomputed BLAST results at BLINK )
Genomic location	10239 - 11381 (+)	Feature type	CDS
Burkholderia Ortholog Group
Product Information
Product Name	AAA ATPase
Alternate Product Names
Subcellular localization	Cytoplasmic (Class 3)
Alternate Annotations and Cross-References
RefSeq	YP_001806725.1
GI	172059073
Entrez	6178132
GBrowse	Click here for a GBrowse View of this and other annotations.

COG Predictions

COG Prediction

COG Accession	Description	Category
COG1131	CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	Defense mechanisms

Homology

BLINK

Precomputed BLAST results at BLINK

Structure Features

PFAM predictions

Accession	Domain	Start	Stop	E-value	Release No.
PF02463	SMC_N, RecF/RecN/SMC N terminal domain.	251	352	1e-05	23.0
PF00005	ABC_tran, ABC transporter.	279	359	3e-06	23.0

Comments

SMART: AAA ATPase; KEGG: scl:sce7683 hypothetical protein

Sequence data

Upstream 500 BP Region

CGCGTCATCACCGACATGTCCGAAGCTGTCGCTGCGCTGCGGGGACTCGTGCAGGAGATGGAAGCGCGCCAGGGTGTTCTTCGACAATACAACGCCCGCA ACCTTGCGGAGGCTCAGGCCAACGGAGCGTCATTGGAACGGCTGATCGTGATTATCGACGAATTAGCCGATTTCATGATGGGCAAGAGCGGGGCAGAAGA ACCCCTGATCCGTCTAGCACAGAAAGCGCGGGCAACCGGGATTCATCTAGTGCTTGCCACCCAACGGCCCGAAGCGGCTACCTTTCCGGGGCTCTTGCGA GCCAACATTCCCAGCCGCATTGCGCTCACGGTCCAGAAGTCGGCAGACTCCAGGATCATCCTCGATGAAGGCGGTGCTGAAAAACTGCTGATGCGTGGTG ACATGCTCGTGAAGCTGGCTGGCCGCGATGCGGTTCGGGCCCATGGCGCGCGCGTGGAGCCGACGGACATCCGAGCAGTGATCCAAGGAGTAAACCGTCG

Need more than 500 BP? Try our sequence retrieval tool or view intergenic regions in GBrowse.

DNA Sequence

ATGAATACACCACTACGCCCCACGAGCTTTCAGCTCGTTCACCTATCACTCCTCGATGTCGGTGCGCTACGAGGCATCACCAACTTCAGTCTTGCCGCCC CCGATGGCCGTGCGGTGAACATCTACTTAATCATGGGCCCGAACGGGGCGGGCAAGACCACCATCTTGGATTCCATTTACGCAGCAATGCGGCTGCTCGA TGCGAAAGAGCATCCGGCGGTCGGGATCGACGCGATCGACCACGGGGAGGGTGGTTTGCAGCTGGATGCTTTGGTCACCCTCGACGATGGCCAACGGTCG CGCCCGTTCCTGTTGTCGATCGTGACAGGTACACCAGGATTGCTGCGAGCCTGGGGGGAAGAGGAGCTTGAAAAATTCGGCGTCGAAAAACAGATCATCT TAGTGTATAAGCGCCATGGCATTGGCACTGCCGTCGCCCGCTCTGCCGAGTCACATCCAGAGGCGCTAAGCTTCGCGGACGCTATCATTGAGCGCCTGGA AGAGCCTCCGCCCGCGCTGTTCGACACGGGCAACGGGTTTCCGACCGTTCTGTACTTCCCTTCAGATCGTGGCATCCGGCGCCCTCCCAAGGGTGAACGT GCAGTCACGCGCCCGGACAGACTGGGCTACTGGCCCGCCCATCGATTCGATACCGATGGCGCGACATGGTCGGCCTCTATCGACAACTTGTTTGTATGGT TCACCTGGCTGGACGACGGACGGGAGAGCCTTTGCCGCGAGCTAGTGAATCAATTGATCTTCCGGGGTGCCAAGCAACTCCGTCCCGTCGATCGCCCCAC TCTTTCTGTTCCGGTAGAGGTGGAAGGTGGTGCGAAGCATCGACTTGATCAACTCAGTAGCGGTGAACGACAACTGGTACAACTGGTTGTTCGGGTTGCC AGCCACATGACCGGTTCTACCATTGTCTTGATCGACGAGACCGAGCAACACCTGCACCTTGTCATGCGGCGGCGGCTGATCAACATCATCAAGAATTGGG CACGCGAACACGAAGGAATGAGTTTCGTGCTCACTTCCCACCAAGCTGACTCCATGCGGATCTTGGCGCCAAAATTGCAAGAAGAAGGCCTGATCAAAGG TGGATGTCTGGTAAAACCCAAGTTCCGTTTGCCGCATGAGTGA

Downstream 500 BP region

Click here to view the nucleotide sequence of the region 500 BP downstream of this gene.

Protein Sequence

MNTPLRPTSFQLVHLSLLDVGALRGITNFSLAAPDGRAVNIYLIMGPNGAGKTTILDSIYAAMRLLDAKEHPAVGIDAIDHGEGGLQLDALVTLDDGQRS RPFLLSIVTGTPGLLRAWGEEELEKFGVEKQIILVYKRHGIGTAVARSAESHPEALSFADAIIERLEEPPPALFDTGNGFPTVLYFPSDRGIRRPPKGER AVTRPDRLGYWPAHRFDTDGATWSASIDNLFVWFTWLDDGRESLCRELVNQLIFRGAKQLRPVDRPTLSVPVEVEGGAKHRLDQLSSGERQLVQLVVRVA SHMTGSTIVLIDETEQHLHLVMRRRLINIIKNWAREHEGMSFVLTSHQADSMRILAPKLQEEGLIKGGCLVKPKFRLPHE

Operons/Regulons

Type

operon

Genes

Gene	Product
BamMC406_0005	hypothetical protein
BamMC406_0006	cell divisionFtsK/SpoIIIE
BamMC406_0007	AAA ATPase
BamMC406_0008	hypothetical protein

Evidence

Computationally Predicted

PubMed

18988623

Cross-Reference

DOOR 443298

References
PubMed