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               Bamb_0006               
Key to diagram


View in GBrowse: (?) 15 putative orthologs Acknowledgements for this annotation
Gene Information
Strain Burkholderia ambifaria AMMD (Tax ID: 339670) Replicon Chromosome1(3294 genes, 3556545 bp) [ RefSeq ]
Gene name   Alternate Gene Names  
Locus tag Bamb_0006 (View 1 update) GenBank Identifier (GI) 115350062 (Precomputed BLAST results at BLINK )
Genomic location 17558 - 17028 (-) Feature type CDS 
Burkholderia Ortholog Group Explanation of Orthologous Groups
Product Information
Product Name cytochrome B561
Alternate Product Names
Subcellular localization
Alternate Annotations and Cross-References
RefSeq YP_771901.1
GI 115350062
Entrez 4309442
GBrowse Click here for a GBrowse View of this and other annotations.
COG Predictions
COG PredictionExplanation of COG predictions
COG Accession Description Category
COG3038 CybB, Cytochrome B561 [Energy production and conversion]. Energy production and conversion
Homology
BLINK Precomputed BLAST results at BLINK
Structure Features
PFAM predictions Explanation of PFAM predictions
Accession Domain Start Stop E-value Release No.
PF01292 Ni_hydr_CYTB, Prokaryotic cytochrome b561. 4 176 1e-25 23.0
 
Comments
Comments PFAM: cytochrome B561 KEGG: bur:Bcep18194_A3195 cytochrome b561
PFAM: cytochrome B561; KEGG: bur:Bcep18194_A3195 cytochrome b561
Sequence data
Upstream 500 BP Region CCGAGCGCGAGCTACGTCACCGAAAGTTATTACGGGCTGAACGCGTTCTACTTCGTGGACGCAGCGGGCAAGCGCCAGGCGGTGCGGTGGCGCGTCGTGC CGGAGCAGACGGCCGGCGCCGGCGACGTCGCGACGGCCGCGGATCCGAACGTGTTGCAGCAGGACCTGACGCATCGCATCGCGGACGGTGCGCAGAAGTG GAAGCTGCTGGTCACGCTGGCGGCGCCCGGCGATCCGGTGGACGACGCGACGAAGGTCTGGCCCGCGCAGCGCACGACGATCGACGCGGGCACGCTCGTG CTCGACCGCGTGGAGCCGCAGGACAGCGGGCCGTGCCGCGATGTGAATTACGACCCGACGGTGTTGCCGCAGGGGATTCAGGTGTCGGGGGATCCGTTGC TGGCGGCGCGGTCGGCGGCTTATGCGGATTCGTATCTGCGCAGGACGAGTGAAGAGGCCGGCGTGGCCGGCGCGGCGCGGTTGAGTGCGGAGGGACGGTG

BLAST search against this genome or other genomes in database
Need more than 500 BP? Try our sequence retrieval tool or view intergenic regions in GBrowse.

DNA Sequence ATGAAGGCGACGACGACGTTTAGCTTGCCGGCGAGGGTGCTGCATTGGGTGATGGCCGCGATGATTCTCACGATGCTGTTTATCGGGGTGGGAATGGTGG CGTCCGTTTCCGAGCGGCATGATTTCCTGGTGGCTTTGCATAAGCCGCTGGGGGTTGCGGTGCTGGTACTGGTTTGTGTGCGGATCGTGGTGCGCTTCGT GTCGAAGCCGCCGGCGTTGCCCGCGGATCTGCCCGTCTGGCAGAAGGTGGCCGCGCATGGGTCGCATCTCGTGCTGTATGCGCTCATGGTTGCGATGCCG CTGATCGGCTGGGCGATGCTGTCGGCTGGCGGGTATCCGGTGACGCTGGGCGGCGGCGTGCAGTTGCCGGCGCTGGTTTCGGCCGATCCGGTGGCGTTTG CCTGGCTCCGGGTCGCGCACCGACTGCTGGCTTACCTGTTCTTCGCTACGTTCGTCGCGCACTTTGCGGCCGCGCTGTATCACGGCTTGATCCGGAGGGA TGGGGTGGTGAGGGCGATGGTGGGGCGGTGA

BLAST search against this genome or other genomes in database


Downstream 500 BP region Click here to view the nucleotide sequence of the region 500 BP downstream of this gene.

Protein Sequence MKATTTFSLPARVLHWVMAAMILTMLFIGVGMVASVSERHDFLVALHKPLGVAVLVLVCVRIVVRFVSKPPALPADLPVWQKVAAHGSHLVLYALMVAMP LIGWAMLSAGGYPVTLGGGVQLPALVSADPVAFAWLRVAHRLLAYLFFATFVAHFAAALYHGLIRRDGVVRAMVGR

BLAST search against this genome or other genomes in database
View precomputed BLAST results against all genomes at NCBI BLINK
Operons/Regulons
Type operon
Genes
GeneProduct
Bamb_0006 cytochrome B561
Bamb_0007 catalase domain-containing protein
Evidence Computationally Predicted
PubMed 18988623
Cross-Reference DOOR 242439
References
PubMed  
We thank Cystic Fibrosis Foundation Therapeutics, Inc. for critical funding support for the Burkholderia Genome Database.



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Burkholderia Genome Database Version 1.0