Burkholderia Genome Database - Annotation for Bcen2424

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Bcen2424_0005

Key to diagram

View in GBrowse: (?)

4 putative orthologs

Acknowledgements for this annotation

Overview
Functional Data
Sequence Data
Operons/Regulons
References

Gene Information
Strain	Burkholderia cenocepacia HI2424 (Tax ID: 331272)	Replicon	Chromosome1(3239 genes, 3483902 bp) [ RefSeq ]
Gene name		Alternate Gene Names
Locus tag	Bcen2424_0005 (View 1 update)	GenBank Identifier (GI)	116688029 (Precomputed BLAST results at BLINK )
Genomic location	8007 - 8804 (+)	Feature type	CDS
Burkholderia Ortholog Group	BG006941 Possible inparalog involved. Orthology uncertain because more than one top BLASTp hit was identified.
Product Information
Product Name	IstB ATP binding domain-containing protein
Alternate Product Names
Subcellular localization	Cytoplasmic (Class 3)
Alternate Annotations and Cross-References
RefSeq	YP_833652.1
GI	116688029
Entrez	4451099
GBrowse	Click here for a GBrowse View of this and other annotations.

COG Predictions

COG Prediction

COG Accession	Description	Category
COG1484	DnaC, DNA replication protein [DNA replication, recombination, and repair].	DNA replication, recombination, and repair

Homology

BLINK

Precomputed BLAST results at BLINK

Structure Features

PFAM predictions

Accession	Domain	Start	Stop	E-value	Release No.
PF01695	IstB, IstB-like ATP binding protein.	53	229	7e-60	23.0
PF00308	Bac_DnaA, Bacterial dnaA protein.	95	190	8e-08	23.0

Comments

PFAM: IstB domain protein ATP-binding protein SMART: AAA ATPase KEGG: bcn:Bcen_4955 IstB-like ATP-binding protein
PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: bcn:Bcen_4955 IstB-like ATP-binding protein

Sequence data

Upstream 500 BP Region

CGTGCCCACCGAGTACACGAACCAGTTGGTGAGCGTGCGCTGCTATCCGGCATATCTCAGCGTCGTCGTCAACGCCCAGGAGATCGCACGCCACGAACGC AGCTTCGAGCGGCACATGACCTTCTACGATTGGCGCCACTACATCACGCTGGTCGAGCGCAAACCCGGCGCACTGCGCAACGGCGCACCGTTCATCACGA TGCCGCAGCCGCTGCAACTGCTGCAGCGGCATCTGCTGAAACACCCGGGCGGCGATCGCGTCATGACGCAGGTGCTCGCTGCGGTGCGCGAACACGGGCT CGATGCGGTGCTGCTCGCCGTACAGGCTGCGCTGGATTCAGGACGCCCCAGCGCAGAGCACGTCCTGAACGTGCTGAGCCGGCTGAAGGCGCCCGTCACG AATGGCAGGCTCGCCACGACGAAACTCCAGCTCAAGGAAGAGCCCGCGGCCGACGTGGGCCGTTACGAGACGCTGCGCGCCAACCCACCGGAGGATCGTC

Need more than 500 BP? Try our sequence retrieval tool or view intergenic regions in GBrowse.

DNA Sequence

ATGTCTAACGATATCGCGGCCCAGCTCAAGGGTCTTAAACTGCACGGCATGGCGAGCACATGGCCGGAGCTGCTCGCGCAGTCGCGTCACACTGACTTCG AGCCGGAGCGCTTCATGAAGCAGCTGTTGATGGCTGAAACCGCCGAACGGCAGGTGCGCTCGATCGCCTATCAAATGACCGCTGCGCGCTTCCCGGCACA CCGCGACCTGAAGGGCTTCGACTTCGCGCAGGCACACGTCGACGAAGCGCTGGTGCGCGAACTGAGCGAGCTGTCGTTCCTCGCAAGCGCGCACAACGTC GTGTTCATCGGTGGTCCGGGCACTGGCAAGACGCACCTCGCCTCAGCGATCGGAATCGAAGCCGTACAGCGCCACGGCAAGCGTGTGCGCTACTTCTCGA CCGTCGAGCTGACCAACGCCCTGGAGCAGGAGAAGTCCATCGGCAAACAAGGCCAGATTGCCCACAAGCTGATGTACGTCGATCTGGTGATCCTCGACGA ACTGGGCTATCTGCCGTTCAGCCAGACCGGCGGTGCATTGCTGTTCCATCTGCTCTCAAAGCTATACGAGCACACGAGCGTCGCGATCACGACCAATCTC AGCTTCGGCGAGTGGGCGAGCGTGTTCGGCGATGCAAAGATGACGACAGCGCTGCTGGACCGCGTCACCCATCACTGCCACATCGTCGAAACGGGCAATG AATCGTGGCGCTTCAGGACCAGTTCTGCCAAGGCAAAGACAACAAGAAAAAGAGCGGAAAAACCAGCGGGTAACGAAGAGTTATCCACACCGGAATAG

Downstream 500 BP region

Click here to view the nucleotide sequence of the region 500 BP downstream of this gene.

Protein Sequence

MSNDIAAQLKGLKLHGMASTWPELLAQSRHTDFEPERFMKQLLMAETAERQVRSIAYQMTAARFPAHRDLKGFDFAQAHVDEALVRELSELSFLASAHNV VFIGGPGTGKTHLASAIGIEAVQRHGKRVRYFSTVELTNALEQEKSIGKQGQIAHKLMYVDLVILDELGYLPFSQTGGALLFHLLSKLYEHTSVAITTNL SFGEWASVFGDAKMTTALLDRVTHHCHIVETGNESWRFRTSSAKAKTTRKRAEKPAGNEELSTPE

Operons/Regulons

Type

operon

Genes

Gene	Product
Bcen2424_0004	integrase catalytic subunit
Bcen2424_0005	IstB ATP binding domain-containing protein

Evidence

Computationally Predicted

PubMed

18988623

Cross-Reference

DOOR 254127

References
PubMed