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               Bcen_0008               
Key to diagram


View in GBrowse: (?) 19 putative orthologs Acknowledgements for this annotation
Gene Information
Strain Burkholderia cenocepacia AU 1054 (Tax ID: 331271) Replicon Chromosome1(3054 genes, 3294563 bp) [ RefSeq ]
Gene name   Alternate Gene Names  
Locus tag Bcen_0008 (View 1 update) GenBank Identifier (GI) 107021570 (Precomputed BLAST results at BLINK )
Genomic location 8351 - 10675 (+) Feature type CDS 
Burkholderia Ortholog Group Explanation of Orthologous Groups
Product Information
Product Name Type II secretion system gspD
Alternate Product Names
Subcellular localization
Outer Membrane (Class 3Explanation of Localization Confidence)
Alternate Annotations and Cross-References
RefSeq YP_619897.1
GI 107021570
Entrez 4091878
GBrowse Click here for a GBrowse View of this and other annotations.
Gene Ontology (GO)
GO Accession GO Term Evidence
Molecular Function
GO:0008565 protein transporter activity IEA
Biological Process
GO:0015628 protein secretion by the type II secretion system IEA
Cellular Component
GO:0015627 type II protein secretion system complex IEA
COG Predictions
COG PredictionExplanation of COG predictions
COG Accession Description Category
COG1450 PulD, Type II secretory pathway, component PulD [Cell motility and secretion / Intracellular trafficking and secretion]. Cell motility and secretion / Intracellular trafficking and secretion
TIGRFAM Prediction
TIGRFAM predictionExplanation of TIGRFAM predictions
Accession Name Function Significance Role Sub Role
TIGR02517 type_II_gspD general secretion pathway protein D 4.2e-304 Protein fate Protein and peptide secretion and trafficking
Pathways
Pathways Explanation of Pathways Field
Name Database Xref
Bacterial secretion system KEGG bcn03070 Computationally Generated
Homology
BLINK Precomputed BLAST results at BLINK
Structure Features
PFAM predictions Explanation of PFAM predictions
Accession Domain Start Stop E-value Release No.
PF03958 Secretin_N, Bacterial type II/III secretion system short domain. 192 263 1e-10 23.0
PF00263 Secretin, Bacterial type II and III secretion system protein. 412 667 2e-57 23.0
 
Comments
Comments TIGRFAM: Type II secretion system gspD
TIGRFAM: Type II secretion system gspD; PFAM: type II and III secretion system protein; NolW-like; KEGG: bur:Bcep18194_A3244 type II and III secretion system protein
Sequence data
Upstream 500 BP Region GATCGCGCGCAGGATCAGCGGATTGACCTGCTGATATTTGGCCGCTTCGTCGAAACAGTCGGCGCGTGCGTTGCCGCTGGCGAACCACGCGCCGGCGGCG ATCAACGCGATCGAAGCGAACCGTCTGTTCATCGTGCGGAAACGAAAGGAAATTGCGCGAAGCTCGGGAAAACCCGTGCCTGTTATTAGTGCGACGAGAA ACGCGCCGCCCGTATCATACCGGCAGACCGTCAGATTGCGACAGGCAGGAATACGGCAGCCCGGTTATACCGCATTTCCGTGTCGGTTCATCGCGAAAAC CAGGGAGAGGGCCGGCGTGCGGAGGGTTACACCTATCCTTACATCTTGCATACGATTCGTCGGATACCTGTCGTATGTGAGACAGTCTTCGGATCAATGT GATATTTCGGACATGAAAAACTGCTAATGTCGCCTCTTTCGGACTTGGATCCCAGCACTACCGCCGGAAGTGGCCTGAGCCGGCATCGACCCATTCATCC

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Need more than 500 BP? Try our sequence retrieval tool or view intergenic regions in GBrowse.

DNA Sequence ATGACAAGAAATCGCTTCGTTATGCGGCGTATCGCCACGACCCTGCTCGTGGCAGGCATCATCGTCTCGCAGGCCGCCTACGCTCAGGTCACGCTCAATT TCGTGAATGCGGATATCGACCAGGTCGCGAAAGCGATCGGCGCCGCGACCGGCAAGACCATCATCGTCGACCCCCGCGTGAAGGGGCAGCTCAATCTCGT GGCCGAACGGCCGGTGCCGGAAGACCAGGCATTGAAGACGCTGCAGTCGGCGCTGCGCATGCAGGGCTTCGCGCTCGTGCAGGATCACGGCGTGCTGAAG GTCGTGCCGGAAGCCGACGCGAAGCTGCAGGGCGTGCCGACCTACATCGGCAATGCGCCGCAGGCGCGCGGCGACCAGGTGATCACGCAGGTGTTCGAGC TGCACAACGAATCGGCGAACAACCTGCTGCCGGTGCTGCGGCCGCTGATCTCGCCGAACAACACGGTGACGGCCTACCCGGCGAACAACACGATCGTCGT GACCGACTATGCGGACAACGTGCGCCGCATCGCGCAGATCATCGCGGGCGTCGACAGCGCCGCGGGCGCGCAGGTGCAGGTCGTGCCGCTGCGCAACGCG AACGCGATCGACCTCGCCGCGCAACTGCAGAAAATGCTCGACCCGGGCGCGATCGGCAACAGCGACGCGACGCTGAAGGTATCGGTCACGGCCGACCCGC GCACCAACGCGCTGCTGCTGCGTGCGTCGAACGCGTCGCGCCTCGCGGCCGCGAAGCGTCTCGTGCAGCAGCTCGACGCGCCGAGCGCGGTGCCCGGCAA CATGCATGTCGTGCCGCTGCGCAACGCCGATGCGGTGAAGCTCGCGAAGACGCTGCGCGGGATGCTCGGCAAGGGCGGCAACGACAGCGGCTCGTCGGCG TCGTCCAACGATGCGAACAGCTTCAACCAGAACGGCGGCTCGTCGTCGAGCGGCAACTTCTCGACCGGCACGTCGGGCACCCCGCCGCTGCCGTCGGGCG GCCTGGGCAGTTCGTCGTCGTCGTCCGGGTATGGCGGCGGCTCGTCCGGCGGTGGCCTCGGTACCGGCGGCCTGCTCGGCGGTGACAAGGACAAGAGCGG CGACGACAACCAGCCGGGCGGGATGATCCAGGCCGACTCGGCCACCAACTCGCTGATCATCACCGCGTCCGATCCGGTGTACCGGAACCTGCGCTCGGTG ATCGACCAGCTCGACGCACGGCGTGCGCAGGTCTATATCGAAGCGCTGATCGTCGAGCTCAACTCGAATACGTCCGGCAACCTCGGCATCCAGTGGCAGG TGGCGAGCGGCCAGTTCCTCGGCGGTACGAACCTGAATCCCACGGGCGGTTTGGGCAACAGCATCATCAACCTGACGACGGGCGGCACGGCGGCCACCGC CGGGTTGGCCGCCAATCTCGCGAACCTGAACCAGGGCCTCAACATCGGCTGGTTGCACAACATGTTCGGCGTGCAGGGGCTCGGCGCGCTGCTGCAGTAT TTTGCGGGCGTGAGCGACGCGAACGTGCTGTCGACGCCGAACCTGATCACGCTCGACAACGAGGAAGCGAAGATCGTCGTCGGCCAGAACGTGCCGATCG CGACCGGTTCGTATTCGAACCTGACGAGCGGCACGACGAGCAACGCGTTCAACACCTACGACCGTCGCGACGTCGGCCTGACGCTGCACGTGAAGCCGCA GATCACCGACGGCGGGATCCTGAAGCTGCAGCTCTATACCGAGGATTCGGCGGTCGTCGCCGGCACGACGAACGCGCAGACCGGCCCGACCTTCACGAAA CGCTCGATCCAGTCGACGATCCTGGCCGACAACGGCGAGATCATCGTGCTCGGCGGCTTGATGCAGGACAACTACCAGGTGTCGAACAGCAAGGTGCCGC TGCTCGGCGACATCCCGTGGATTGGCCAGTTGTTCCGCTCCGAAACGAAGCAGCGCGCGAAAACCAACCTGATGGTGTTCCTGCGCCCGGTGATCATTTC CGATCGCAGCACCGCGCAGGCAGTCACCGCGAACCGCTACGACTACATCCAGGGCGTGACGGGCGCCTACAAGTCGGACAACAACGTGATGCGCGACAAG GACGACCCGGTCGTCCCGCCGATGCCGCTGGGTCCGAGCCAGGGCGGCACGCCGGCCGGCAATCTGTTCGATCTCGACAAGATGCGTCGCCAGCAGTTGC AGCGCCAGGTGGTGCCCGTGCCTGCCCAGCCATTGCCGGAAGCAACGCCCGCGCAGCCGCAAAGCGTGCCGCAGCAGGCGGTGCCGCAACAGCCGCTGAC CACCGCGCCGGGAGCCTCGCAGTGA

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Downstream 500 BP region Click here to view the nucleotide sequence of the region 500 BP downstream of this gene.

Protein Sequence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

BLAST search against this genome or other genomes in database
View precomputed BLAST results against all genomes at NCBI BLINK
Operons/Regulons
Type operon
Genes
GeneProduct
Bcen_0008 Type II secretion system gspD
Bcen_0009 Type II secretion system gspE
Bcen_0010 General secretion pathway protein F
Evidence Computationally Predicted
PubMed 18988623
Cross-Reference DOOR 213916
References
PubMed  
We thank Cystic Fibrosis Foundation Therapeutics, Inc. for critical funding support for the Burkholderia Genome Database.



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Burkholderia Genome Database Version 1.0