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               Bcep1808_0007               
Key to diagram


View in GBrowse: (?) 7 putative orthologs Acknowledgements for this annotation
Gene Information
Strain Burkholderia vietnamiensis G4 (Tax ID: 269482) Replicon Chromosome1(3389 genes, 3652814 bp) [ RefSeq ]
Gene name   Alternate Gene Names  
Locus tag Bcep1808_0007 (View 1 update) GenBank Identifier (GI) 134294134 (Precomputed BLAST results at BLINK )
Genomic location 11102 - 12658 (+) Feature type CDS 
Burkholderia Ortholog Group Explanation of Orthologous Groups
BG006060 
Possible inparalog involved.
Orthology uncertain because more than one top BLASTp hit was identified.
May contain one or more ortholog fragments (i.e. length of smallest gene in group is less than 1/4 of the median length for group)
Product Information
Product Name integrase catalytic subunit
Alternate Product Names
Subcellular localization
Cytoplasmic (Class 3Explanation of Localization Confidence)
Alternate Annotations and Cross-References
RefSeq YP_001117869.1
GI 134294134
Entrez 4951679
GBrowse Click here for a GBrowse View of this and other annotations.
COG Predictions
COG PredictionExplanation of COG predictions
COG Accession Description Category
COG4584 COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair]. DNA replication, recombination, and repair
Homology
BLINK Precomputed BLAST results at BLINK
Structure Features
PFAM predictions Explanation of PFAM predictions
Accession Domain Start Stop E-value Release No.
PF00665 rve, Integrase core domain. 140 309 5e-15 23.0
 
Comments
Comments PFAM: Integrase, catalytic region KEGG: bxe:Bxe_A1795 putative transposase
PFAM: Integrase, catalytic region; KEGG: bxe:Bxe_A1795 putative transposase
Sequence data
Upstream 500 BP Region TGGAAATAAGGGCGAAGTTTTCCGAAGAGAATATCCCGGAATTCGAACCAAAATTTCCCGCTCTCCAATCCCTCTGCGGTACCCATGTTGTCGAGCGCAA TCGACTTCCTGGGCATGTGTTCCAAACCGATGTACGGTGTGCTGGCAGGCATCTGACCGGGCTTCGCCGGCGAACGCGGATTCCACGCCACGTCACTAAG CTTTCCAATCCTCCACCCAGTCGGAATCTCCCCCAATGCGTATTCCGGCGAACGTGATCACGCATTTCGGCGGATCGTGATCATGGATTCCGAATGATCG TGATCACCCGTTTCGGTTGATCGTGATCGCTGATCACAGGTTTCCGAAACGCGTGATCACGATGCCGGAATGAGCGATCACGGGACCGAAACGGGTGATC ACGTAACCGGAACGTAATCCGGGTTTGAGTCTGGCGGTGGCGTTGCGCATGTATTCACCGACGGCGTTAGCCTGCTCCCTTTTTTGCGGGAGAAGTGCCG

BLAST search against this genome or other genomes in database
Need more than 500 BP? Try our sequence retrieval tool or view intergenic regions in GBrowse.

DNA Sequence ATGCCGACACCTCGGATGAGCATGCGCAAATTGAAGGAAGTCCTGCGACTAAAGTGGGCGTGTGGCCTGACGCATCGGCAGATCAGCCGGGCTATCGGCA TCAGCGTCGGTGCCGTCTCGAAGTTCGCGGCCCAAGCCAGCCAGGCGGGACTCGATTGGGCGGCAGCCGAAGCAATGTCCGACGACGAACTGGACGCGCG CCTGAGGCCTGCGGCAACCAATGCCGCGGCGACGACGACGCGACGCATCGAGCCCGACTACACGGCATTGCATCGCGAGCTGCGCCGCAAGGGCGTGACG CTGCAACTGCTGTGGGAAGAATACGCTGAAGCGAACCCCGGCCAGCGGACGTACCGCTACACGCAGTTCTGCCAGAAGTACAAGGACTGGGCGAAGTCGA TCAAGCGCTCGATGCGTCAGCAGCACCGCGCCGGCGAGAAGCTGTTCGCGGACTTCGCGGGTCCCACCGTGCCGGTCCTGGCGAGCGATGGCGGCGTCGA GTTCGAGGCGCACGTGTTCGTTGCCGTGCTCGGCGCATCCAACTACACGTTCGCGTGCGCGACGCGCACCGAGACGATGGCGGACTGGATCGGCAGCCTG TGCGATGCGCTAGAGTTCATTGGCGGCGTGCCCGAACTGCTCGTGCCCGACAACCCGAAGGCGCTGATCGCGCGACCCGACCGTTACGAACCCGGACTCG GCACGACCACGCAGGACTTCGTGAACCACTACGGCACCGCGATGCTGCCGGCGCGTCCGCGCAAACCGCAGGACAAGGCCAAGGTCGAAGTCGGCGTGCA GATCGTCGAGCGCTGGGTGCTGGCCCGACTGCGCCACTATCGCTTCTACAGTCTGGCTGAACTCAACAAGGCGATTGCAGAACTGATCGCCGACCTAAAC CAGCGCCCGTTCAAGCGGCTCGAAGGCAACCGGCGTGAATGGTTCGAACGGCTGGACCAACCCGTCCTGCGCCCGTTGCCCGTGCGTCGCTACGAGATCG CCACCTTCCAGAAGTGCCGTGTGAACATCGATTACCACGTCGATGTCGGCGGCCACTATTACAGCGTCCCGCATAGCCTCGCACGGCAGGAGGTCTGGGC GCGTATCACACGCCACGGCGTAGAGATCCTGCATGGCGGCAAGCGTGTCGCTGCGCACGCTCGCTCGCGCCTCAAAGGCAAACACACGACCATCGCCGAA CACATGCCGGCTGCGCATCGCGCGCACATGGAATGGACGCCTGGGCGCCTGCTCAACTGGGGCGCATCCGTCGGCCCCGGCGCCGAGGCTGTCGTGCGGC ATCTGCTGACCAACAAACCTCACCCCGAGATGGGCTATCGCGCCTGTCTCGGTCTTCTCTCGCTCGCGCGCAAGTACGGCAAACACCGCCTCGAGGCCGC ATGCCAGCGTGCATTGAAGATCGGCTCGCCCACGCGTCGCTCCGTGCTGTCAATCCTGGAAGCGGGACTTGACCTGCAGCCCTCGCTCCCGACCACGCCC GCCGAATGGCGCTCGCCCGAGCACGAGAACGTGCGCGGCCCCGACTACTACCACTGA

BLAST search against this genome or other genomes in database


Downstream 500 BP region Click here to view the nucleotide sequence of the region 500 BP downstream of this gene.

Protein Sequence MPTPRMSMRKLKEVLRLKWACGLTHRQISRAIGISVGAVSKFAAQASQAGLDWAAAEAMSDDELDARLRPAATNAAATTTRRIEPDYTALHRELRRKGVT LQLLWEEYAEANPGQRTYRYTQFCQKYKDWAKSIKRSMRQQHRAGEKLFADFAGPTVPVLASDGGVEFEAHVFVAVLGASNYTFACATRTETMADWIGSL CDALEFIGGVPELLVPDNPKALIARPDRYEPGLGTTTQDFVNHYGTAMLPARPRKPQDKAKVEVGVQIVERWVLARLRHYRFYSLAELNKAIAELIADLN QRPFKRLEGNRREWFERLDQPVLRPLPVRRYEIATFQKCRVNIDYHVDVGGHYYSVPHSLARQEVWARITRHGVEILHGGKRVAAHARSRLKGKHTTIAE HMPAAHRAHMEWTPGRLLNWGASVGPGAEAVVRHLLTNKPHPEMGYRACLGLLSLARKYGKHRLEAACQRALKIGSPTRRSVLSILEAGLDLQPSLPTTP AEWRSPEHENVRGPDYYH

BLAST search against this genome or other genomes in database
View precomputed BLAST results against all genomes at NCBI BLINK
Operons/Regulons
Type operon
Genes
GeneProduct
Bcep1808_0007 integrase catalytic subunit
Bcep1808_0008 IstB ATP binding domain-containing protein
Evidence Computationally Predicted
PubMed 18988623
Cross-Reference DOOR 310763
References
PubMed  
We thank Cystic Fibrosis Foundation Therapeutics, Inc. for critical funding support for the Burkholderia Genome Database.



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Burkholderia Genome Database Version 1.0