Burkholderia Genome Database - Annotation for Bmul

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Bmul_0007

Key to diagram

View in GBrowse: (?)

13 putative orthologs

Acknowledgements for this annotation

Overview
Functional Data
Sequence Data
Operons/Regulons
References

Gene Information
Strain	Burkholderia multivorans ATCC 17616 (Tax ID: 395019)	Replicon	Chromosome_1(3224 genes, 3448466 bp) [ RefSeq ]
Gene name		Alternate Gene Names
Locus tag	Bmul_0007 (View 1 update)	GenBank Identifier (GI)	161523187 (Precomputed BLAST results at BLINK )
Genomic location	9242 - 9760 (+)	Feature type	CDS
Burkholderia Ortholog Group	BG000007
Product Information
Product Name	ECF subfamily RNA polymerase sigma-24 factor
Alternate Product Names
Subcellular localization	Cytoplasmic Membrane (Class 3)
Alternate Annotations and Cross-References
RefSeq	YP_001578199.1
GI	161523187
Entrez	5766760
GBrowse	Click here for a GBrowse View of this and other annotations.

COG Predictions

COG Prediction

COG Accession	Description	Category
COG1595	RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog [Transcription].	Transcription

TIGRFAM Prediction

TIGRFAM prediction

Accession	Name	Function	Significance	Role	Sub Role
TIGR02937	sigma70-ECF	RNA polymerase sigma factor, sigma-70 family	7e-28	No Data	No Data

Homology

BLINK

Precomputed BLAST results at BLINK

Structure Features

PFAM predictions

Accession	Domain	Start	Stop	E-value	Release No.
PF04542	Sigma70_r2, Sigma-70 region 2.	12	77	2e-06	23.0
PF08281	Sigma70_r4_2, Sigma-70, region 4.	103	155	8e-09	23.0
PF04545	Sigma70_r4, Sigma-70, region 4.	108	156	9e-06	23.0

Comments

TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: bam:Bamb_0008 RNA polymerase, sigma-24 subunit, ECF subfamily

Sequence data

Upstream 500 BP Region

CGCATATGGATTCCCGCCCGGCAACGCGAACCGCCCGACCACCGGCGTGCGCACGGGTTTGAAGAATGGCGCGACGGAATACTGGCTCGCCGTGCCGTTG CCTTCGAAGTAGCCCGTCACGCAGACGCCCTTCGCGTGATTGCGCCGGAAGCCGGGATGCAGGCCGCCGGCAGTCTGCAGCGCATCGACGAGCCGGTGCG GGGTCAGGCGGGCCGGCGCAAGCCAGCCACCGACATAGCCGAACGCCAGCGCGGCGCCCGCGACGGCGCCGCCGATCGCGGCCCACCGCCACCCTCTGCG GCCGGGCTCGCGCGGCGGCGGCGAAGAAGAGGAAGATCGTTCCATGAATGCACTCCCGATCGTCAGATCATTGTCGAACGCGCGTAGGACGCCGGCCGCC CGCCTTTATTCCATGAAGAAATTTTTCGTATGCTGATGGAATAACGGACGTCGACCGGCGTCATACGCGGCATCTCCACGTTTCCGGCAACGGTCCGGCC

Need more than 500 BP? Try our sequence retrieval tool or view intergenic regions in GBrowse.

DNA Sequence

ATGCCCTCAAACGCCCTCGACGACGACGCGTTACGCGAACTCATCCCTCGGCTGCGCCGCTTCGCGCTGTGGCTCGCGCGCGATGTGCACGCGGCCGACG ATCTCGTGCAGTCGACGCTCGAGCGCGCGCTGTCGCGCTGGACGAGCCGTCGCGACGACGCGTCGCTGCGCAGCTGGCTGTTCACGATCCTTTACCGGCA GTTTCTCGACGGCAAACGCAGCGCGAAACGCTACGCGTGGCTGCTCGGTCGCATCCGCGACGACGAAGAGCCGCATTGGCCGTCCGCCGAGCGCGAAGTC GCCGCGCGGGCGACGCTCGAGGCGTTCGGCCGGCTGTCCGACGAGCAGCGCAGCCTGCTGCTGCTCGTCGCGGTCGAGGGCTTTACGTATCAGGAAGTCG CCGATTTGCTCGACGTGCCGATCGGCACGGTGATGTCGCGGCTGTCGCGCGCGCGTCAGGCGCTGCGTCTGCTCAGCGACGGCGAACTGCCGGCCCCTTC ACTGCGGTTGATGAAATGA

Downstream 500 BP region

Click here to view the nucleotide sequence of the region 500 BP downstream of this gene.

Protein Sequence

MPSNALDDDALRELIPRLRRFALWLARDVHAADDLVQSTLERALSRWTSRRDDASLRSWLFTILYRQFLDGKRSAKRYAWLLGRIRDDEEPHWPSAEREV AARATLEAFGRLSDEQRSLLLLVAVEGFTYQEVADLLDVPIGTVMSRLSRARQALRLLSDGELPAPSLRLMK

Operons/Regulons

Type

operon

Genes

Gene	Product
Bmul_0007	ECF subfamily RNA polymerase sigma-24 factor
Bmul_0008	putative transmembrane anti-sigma factor

Evidence

Computationally Predicted

PubMed

18988623

Cross-Reference

DOOR 400752

References
PubMed