Related Links

Additional resources for Burkholderia sequence analysis, gene annotation and functional pathway analysis are listed below. We encourage researchers to contact us with suggestions for additional items that should be listed.

• International Burkholderia cepacia Working Group website


• Burkholderia cepacia information from the Cystic Fibrosis Foundation


• Pathema-Burkholderia database website - National Institute of Allergy and Infectious Diseases (NIAID)
  
  As an NIAID Bioinformatics Resource Center (BRC) Pathema contains in depth curatorial analysis of six target organisms from the list of NIAID Category A, B & C Priority Pathogens. Pathema also offers single-genome and comparative multi-genome analyses as well as display tools at the genome, gene, and pathway level for these pathogens.
  
  
• Burkholderia sequencing projects at the Joint Genome Institute (JGI).
  
  
• Burkholderia cenocepacia J2315 sequencing project web page at the Wellcome Trust Sanger Institute.
  
  
• Burkholderia ambifaria strain MC40-6 genome project website link at NCBI.
• Burkholderia cenocepacia strain AU 1054 genome project website link at NCBI.
• Burkholderia cenocepacia strain HI2424 genome project website link at NCBI.
• Burkholderia cenocepacia strain MC0-3 genome project website link at NCBI.
• Burkholderia ambifaria strain AMMD genome project website link at NCBI.
Burkholderia mallei strain ATCC 23344 genome project website link at NCBI.
• Burkholderia mallei strain NCTC 10229 genome project website link at NCBI.
• Burkholderia mallei strain NCTC 10247 genome project website link at NCBI.
Burkholderia mallei strain SAVP1 genome project website link at NCBI.Burkholderia multivorans strain ATCC 17616 genome project website link at NCBI.Burkholderia phymatum strain STM815 genome project website link at NCBI.Burkholderia pseudomallei strain 668 genome project website link at NCBI.Burkholderia pseudomallei strain 1106a genome project website link at NCBI.Burkholderia pseudomallei strain 1710b genome project website link at NCBI.Burkholderia pseudomallei strain K96243 genome project website link at NCBI.Burkholderia lata strain 383 genome project website link at NCBI.Burkholderia thailandensis strain E264 genome project website link at NCBI.Burkholderia vietnamiensis strain G4 genome project website link at NCBI.Burkholderia xenovorans strain LB400 genome project website link at NCBI.
• Also see our acknowledgements page

Burkholderia genome project lists - including those in progress

• View our list of Burkholderia genome projects


• View a list at the Genomes Online website


• View listing of complete and incomplete microbial genome projects at NCBI.


• View a list of other Burkholderia genome sequencing projects at JGI.

Other analyses

• IslandPath Analyses of Genomic Islands for Burkholderia spp. and other bacteria.
  
  IslandPath is a graphical tool that aids with identification of genomics islands, including pathogenicity islands, of potentially horizontally transferred genes. Brinkman lab, Simon Fraser University, Burnaby, BC.


• IslandViewer - Brinkman Lab, Simon Fraser University, Canada
  
  IslandViewer is tool for visualization of genomic islands that have been predicted using three different computational methods (IslandPick, SIGI-HMM and IslandPath-DIMOB).


• WebACT - Imperial College, London.
  
  WebACT provides a database of sequence comparisons between all publicly available prokaryotic genome sequences, allowing the on-line visualisation of comparisons between up to five genomic sequences, using the Artemis Comparison Tool (ACT) developed by the Sanger Institute. Abbott JC, Aanensen DM, Bentley SD. 2007 (PubMed)