Strain |
Burkholderia cenocepacia J2315
GCF_000009485.1|latest |
Locus Tag |
BCAL1935
|
NCBI Locus Tag | QU43_RS46220 |
Name |
|
Replicon | chromosome 1 |
Genomic location | 2134840 - 2135736 (+ strand) |
Comment | In PMID:27597847: arnT, arnB, arnC, arnA1, arnA2, and BCAL1935 located in the arn gene cluster harbored significantly low frequencies of transposon insertions (TraDIS). They were therefore categorized as essential by the authors. |
RefSeq | WP_006482870.1 |
GI | 206560299 |
Entrez | 6932124 |
GI | 206560299 |
INSDC | CAR52236.1 |
NCBI Locus Tag | QU43_RS46220 |
NCBI Old Locus Tag | BCAL1935 |
RefSeq | WP_006482870.1,GeneID |
UniParc | UPI00017B9223 |
UniProtKB Acc | B4EB21 |
UniProtKB ID | B4EB21_BURCJ |
UniRef100 | UniRef100_B4EB21 |
UniRef50 | UniRef50_D8IT25 |
UniRef90 | UniRef90_A0A0B6RN99 |
Feature Type | CDS |
Coding Frame | 1 |
Product Name |
polysaccharide deacetylase
|
Synonyms | |
Evidence for Translation | |
Charge (pH 7) | -0.42 |
Kyte-Doolittle Hydrophobicity Value | -0.302 |
Molecular Weight (kDa) | 33367.6 |
Isoelectric Point (pI) | 6.94 |
Individual Mappings | |
Additional evidence for subcellular localization |
Results |
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 49 genera
|
Burkholderia Ortholog Group |
BG001697 (653 members) |
Putative Inparalogs | None Found |
STRING database | Search for predicted protein-protein interactions using:
Search term: BCAL1935
Search term: polysaccharide deacetylase
|
A putative gene cluster for aminoarabinose biosynthesis is essential for Burkholderia cenocepacia viability.
Ortega XP, Cardona ST, Brown AR, Loutet SA, Flannagan RS, Campopiano DJ, Govan JR, Valvano MA
J Bacteriol 2007 May;189(9):3639-44
PubMed ID: 17337576
|
Candidate Essential Genes in Burkholderia cenocepacia J2315 Identified by Genome-Wide TraDIS.
Wong YC, Abd El Ghany M, Naeem R, Lee KW, Tan YC, Pain A, Nathan S
Front Microbiol 2016;7:1288
PubMed ID: 27597847
|