Sep 15, 2008 |
Bcenmc03_4542
|
Burkholderia cenocepacia
MC0-3 |
New gene name: parB. New product name: chromosome partitioning protein ParB. New product name confidence: Class 1. New homology: 94% identity to parB[B. Cenocepacia AU 1054]. New evidence reference (PMID): 18328098. New evidence reference (PMID): 16452432.
|
Literature review. Based on article by Mahenthiralingam, E. Warwick University, Coventry, UK; Lane, D. Centre National de Recherche Scientifique, France.
|
Sep 15, 2008 |
Bcep18194_B0004
|
|
New gene name: parB. New product name: chromosome partitioning protein ParB. New product name confidence: Class 1. New homology: 92% identity to parB[B. Cenocepacia AU 1054]. New evidence reference (PMID): 18328098. New evidence reference (PMID): 16452432.
|
Literature review. Based on article by Mahenthiralingam, E. Warwick University, Coventry, UK; Lane, D. Centre National de Recherche Scientifique, France.
|
Sep 15, 2008 |
Bamb_4966
|
|
New gene name: parB. New product name: chromosome partitioning protein ParB. New product name confidence: Class 1. New homology: 92% identity to parB[B. Cenocepacia AU 1054]. New evidence reference (PMID): 18328098. New evidence reference (PMID): 16452432.
|
Literature review. Based on article by Mahenthiralingam, E. Warwick University, Coventry, UK; Lane, D. Centre National de Recherche Scientifique, France.
|
Sep 15, 2008 |
Bcen_4539
|
|
New gene name: bceF. New product name: tyrosine autokinase BceF. New product name confidence: Class 1. New homology: 91% identity to BceF[B. cepacia IST408]. New evidence reference (PMID): 17114319.
|
Literature review. Based on article by Moreira, L. M. Instituto Superior Tecnico, Av. Rovisco Pais, Portugal.
|
Sep 15, 2008 |
Bcen_4541
|
|
New gene name: bceD. New product name: phosphotyrosine phosphatase BceD. New product name confidence: Class 1. New homology: 91% identity to BceD[ B. cepacia IST408]. New evidence reference (PMID): 17114319.
|
Literature review. Based on article by Moreira, L. M. Instituto Superior Tecnico, Av. Rovisco Pais, Portugal.
|
Sep 15, 2008 |
Bcen2424_3822
|
|
New gene name: bceD. New product name: phosphotyrosine phosphatase BceD. New product name confidence: Class 1. New homology: 91% identity to BceD[ B. cepacia IST408]. New evidence reference (PMID): 17114319.
|
Literature review. Based on article by Moreira, L. M. Instituto Superior Tecnico, Av. Rovisco Pais, Portugal.
|
Sep 15, 2008 |
Bcen2424_3824
|
|
New gene name: bceF. New product name: tyrosine autokinase BceF. New product name confidence: Class 1. New homology: 91% identity to BceF[B. cepacia IST408]. New evidence reference (PMID): 17114319.
|
Literature review. Based on article by Moreira, L. M. Instituto Superior Tecnico, Av. Rovisco Pais, Portugal.
|
Sep 15, 2008 |
Bcenmc03_3702
|
Burkholderia cenocepacia
MC0-3 |
New gene name: bceD. New product name: phosphotyrosine phosphatase BceD. New product name confidence: Class 1. New homology: 91% identity to BceD[ B. cepacia IST408]. New evidence reference (PMID): 17114319.
|
Literature review. Based on article by Moreira, L. M. Instituto Superior Tecnico, Av. Rovisco Pais, Portugal.
|
Sep 15, 2008 |
Bcep1808_4203
|
Burkholderia vietnamiensis
G4 |
New gene name: bceD. New product name: phosphotyrosine phosphatase BceD. New product name confidence: Class 1. New homology: 88% identity to BceD[ B. cepacia IST408]. New evidence reference (PMID): 17114319.
|
Literature review. Based on article by Moreira, L. M. Instituto Superior Tecnico, Av. Rovisco Pais, Portugal.
|
Sep 15, 2008 |
Bcep1808_4205
|
Burkholderia vietnamiensis
G4 |
New gene name: bceF. New product name: tyrosine autokinase BceF. New product name confidence: Class 1. New homology: 89% identity to BceF[B. cepacia IST408]. New evidence reference (PMID): 17114319.
|
Literature review. Based on article by Moreira, L. M. Instituto Superior Tecnico, Av. Rovisco Pais, Portugal.
|
Sep 15, 2008 |
Bcep18194_B1816
|
|
New product name: putative protein tyrosine kinase. New product name confidence: Class 3. New homology: 33% identity and 53% similarity to BceF [B. cepacia IST408]. New evidence reference (PMID): 17114319.
|
Literature review. Based on article by Moreira, L. M. Instituto Superior Tecnico, Av. Rovisco Pais, Portugal.
|
Sep 15, 2008 |
Bcep18194_B2272
|
|
New gene name: bceF. New product name: tyrosine autokinase BceF. New product name confidence: Class 1. New homology: 94% identity to BceF[B. cepacia IST408]. New evidence reference (PMID): 17114319.
|
Literature review. Based on article by Moreira, L. M. Instituto Superior Tecnico, Av. Rovisco Pais, Portugal.
|
Sep 15, 2008 |
Bcep18194_B2274
|
|
New gene name: bceD. New product name: phosphotyrosine phosphatase BceD. New product name confidence: Class 1. New homology: 92% identity to BceD[ B. cepacia IST408]. New evidence reference (PMID): 17114319.
|
Literature review. Based on article by Moreira, L. M. Instituto Superior Tecnico, Av. Rovisco Pais, Portugal.
|
Sep 15, 2008 |
Bcep18194_B2865
|
|
New product name: putative protein tyrosine phosphatase. New product name confidence: Class 3. New homology: 41% identity and 54% similarity to BceD [B. cepacia IST408]. New evidence reference (PMID): 17114319.
|
Literature review. Based on article by Moreira, L. M. Instituto Superior Tecnico, Av. Rovisco Pais, Portugal.
|
Sep 15, 2008 |
Bcep18194_B2866
|
|
New product name: putative protein tyrosine kinase. New product name confidence: Class 3. New homology: 36% identity and 54 % similarity to BceF [B. cepacia IST408]. New evidence reference (PMID): 17114319.
|
Literature review. Based on article by Moreira, L. M. Instituto Superior Tecnico, Av. Rovisco Pais, Portugal.
|
Sep 15, 2008 |
Bcep18194_C7398
|
|
New product name: putative protein tyrosine kinase. New product name confidence: Class 3. New homology: 37% identity and 56 similarity to BceF [B. cepacia IST408]. New evidence reference (PMID): 17114319.
|
Literature review. Based on article by Moreira, L. M. Instituto Superior Tecnico, Av. Rovisco Pais, Portugal.
|
Sep 15, 2008 |
Bcep18194_C7399
|
|
New product name: putative protein tyrosine phosphatase. New product name confidence: Class 3. New homology: 35% identity and 55 % similarity to BceD [B. cepacia IST408]. New evidence reference (PMID): 17114319.
|
Literature review. Based on article by Moreira, L. M. Instituto Superior Tecnico, Av. Rovisco Pais, Portugal.
|
Sep 15, 2008 |
Bamb_5548
|
|
New gene name: bceD. New product name: phosphotyrosine phosphatase BceD. New product name confidence: Class 1. New homology: 88% identity to BceD[ B. cepacia IST408]. New evidence reference (PMID): 17114319.
|
Literature review. Based on article by Moreira, L. M. Instituto Superior Tecnico, Av. Rovisco Pais, Portugal.
|
Sep 15, 2008 |
Bamb_5550
|
|
New gene name: bceF. New product name: tyrosine autokinase BceF. New product name confidence: Class 1. New homology: 89% identity to BceF[B. cepacia IST408]. New evidence reference (PMID): 17114319.
|
Literature review. Based on article by Moreira, L. M. Instituto Superior Tecnico, Av. Rovisco Pais, Portugal.
|
Sep 15, 2008 |
Bcen_4800
|
|
New gene name: atsR. New product name: adherence and T6 secretion system regulator AtsR. New product name confidence: Class 1. New homology: 82% identity to AtsR [B. cenocepacia J2315]. New evidence reference (PMID): 18316384.
|
Literature review. Based on article by Schell, M. A. University of Georgia, Athens, Georgia.
|
Sep 15, 2008 |
Bcen2424_3368
|
|
New gene name: atsR. New product name: adherence and T6 secretion system regulator AtsR. New product name confidence: Class 1. New homology: 82% identity to AtsR [B. cenocepacia J2315]. New evidence reference (PMID): 18316384.
|
Literature review. Based on article by Schell, M. A. University of Georgia, Athens, Georgia.
|
Sep 15, 2008 |
Bcen2424_6002
|
|
New gene name: afcA. New product name: putative amino acid activating protein. New product name confidence: Class 1. New homology: 95% identity to AfcA [B.cepacia BC11]. New evidence reference (PMID): 9758823.
|
Literature review. Based on article by Schell, M. A. University of Georgia, Athens, Georgia.
|
Sep 15, 2008 |
Bcenmc03_4148
|
Burkholderia cenocepacia
MC0-3 |
New gene name: atsR. New product name: adherence and T6 secretion system regulator AtsR. New product name confidence: Class 1. New homology: 82% identity to AtsR [B. cenocepacia J2315]. New evidence reference (PMID): 18316384.
|
Literature review. Based on article by Schell, M. A. University of Georgia, Athens, Georgia.
|
Sep 15, 2008 |
Bcenmc03_6493
|
Burkholderia cenocepacia
MC0-3 |
New gene name: afcA. New product name: putative amino acid activating protein. New product name confidence: Class 1. New homology: 95% identity to AfcA [B.cepacia BC11]. New evidence reference (PMID): 9758823.
|
Literature review. Based on article by Schell, M. A. University of Georgia, Athens, Georgia.
|
Sep 15, 2008 |
Bcep18194_B2888
|
|
New gene name: atsR. New product name: adherence and T6 secretion system regulator AtsR. New product name confidence: Class 1. New homology: 79% identity to AtsR [B. cenocepacia J2315]. New evidence reference (PMID): 18316384.
|
Literature review. Based on article by Schell, M. A. University of Georgia, Athens, Georgia.
|
Sep 15, 2008 |
Bcep18194_C7411
|
|
New gene name: afcA. New product name: putative amino acid activating protein. New product name confidence: Class 1. New homology: 89% identity to AfcA [B.cepacia BC11]. New evidence reference (PMID): 9758823.
|
Literature review. Based on article by Schell, M. A. University of Georgia, Athens, Georgia.
|
Sep 15, 2008 |
Bamb_5145
|
|
New gene name: atsR. New product name: adherence and T6 secretion system regulator AtsR. New product name confidence: Class 1. New homology: 77% identity to AtsR [B. cenocepacia J2315]. New evidence reference (PMID): 18316384.
|
Literature review. Based on article by Schell, M. A. University of Georgia, Athens, Georgia.
|
Sep 15, 2008 |
Bamb_6150
|
|
New gene name: afcA. New product name: putative amino acid activating protein. New product name confidence: Class 1. New homology: 86% identity to AfcA [B.cepacia BC11]. New evidence reference (PMID): 9758823.
|
Literature review. Based on article by Schell, M. A. University of Georgia, Athens, Georgia.
|
Sep 15, 2008 |
Bcen_3643
|
|
New gene name: cepR. New product name: transcriptional regulator CepR. New product name confidence: Class 1. New homology: 98% identity to CepR[B. cepacia K56-2]. New evidence reference (PMID): 11402012.
|
Literature review. Based on article by Sokol, P. A. University of Calgary Health Sciences Center, Calgary, Alberta.
|
Sep 15, 2008 |
Bcen2424_4724
|
|
New gene name: cepR. New product name: transcriptional regulator CepR. New product name confidence: Class 1. New homology: 98% identity to CepR[B. cepacia K56-2]. New evidence reference (PMID): 11402012.
|
Literature review. Based on article by Sokol, P. A. University of Calgary Health Sciences Center, Calgary, Alberta.
|
Sep 15, 2008 |
Bcep18194_B1052
|
|
New gene name: cepR. New product name: transcriptional regulator CepR. New product name confidence: Class 1. New homology: 96% identity to CepR[B. cepacia K56-2]. New evidence reference (PMID): 11402012.
|
Literature review. Based on article by Sokol, P. A. University of Calgary Health Sciences Center, Calgary, Alberta.
|
Sep 15, 2008 |
Bamb_4116
|
|
New gene name: cepR. New product name: transcriptional regulator CepR. New product name confidence: Class 1. New homology: 94% identity to CepR[B. cepacia K56-2]. New evidence reference (PMID): 11402012.
|
Literature review. Based on article by Sokol, P. A. University of Calgary Health Sciences Center, Calgary, Alberta.
|
Sep 15, 2008 |
Bcen_0330
|
|
New gene name: caiA. New product name confidence: Class 2. New homology: 95% identity to CaiA[B. cenocepacia J2315][accession number CAR53514.1]. New evidence reference (PMID): 17187664.
|
Literature review. Based on article by Sokol, P. A. University of Calgary Health Sciences Centre, Calgary, Alberta.
|
Sep 15, 2008 |
Bcen_1916
|
|
New gene name: fusA. New product name confidence: Class 2. New homology: 97% identity to FusA[ B. cenocepacia J2315][accession number CAR53040]. New evidence reference (PMID): 17187664.
|
Literature review. Based on article by Sokol, P. A. University of Calgary Health Sciences Centre, Calgary, Alberta.
|
Sep 15, 2008 |
Bcen2424_0813
|
|
New gene name: caiA. New product name confidence: Class 2. New homology: 95% identity to CaiA[B. cenocepacia J2315][accession number CAR53514.1]. New evidence reference (PMID): 17187664.
|
Literature review. Based on article by Sokol, P. A. University of Calgary Health Sciences Centre, Calgary, Alberta.
|
Sep 15, 2008 |
Bcen2424_2528
|
|
New gene name: fusA. New product name confidence: Class 2. New homology: 97% identity to FusA[ B. cenocepacia J2315][accession number CAR53040]. New evidence reference (PMID): 17187664.
|
Literature review. Based on article by Sokol, P. A. University of Calgary Health Sciences Centre, Calgary, Alberta.
|
Sep 15, 2008 |
Bcenmc03_0782
|
Burkholderia cenocepacia
MC0-3 |
New gene name: caiA. New product name confidence: Class 2. New homology: 96% identity to CaiA[B. cenocepacia J2315][accession number CAR53514.1]. New evidence reference (PMID): 17187664.
|
Literature review. Based on article by Sokol, P. A. University of Calgary Health Sciences Centre, Calgary, Alberta.
|
Sep 15, 2008 |
Bcenmc03_2552
|
Burkholderia cenocepacia
MC0-3 |
New gene name: fusA. New product name confidence: Class 2. New homology: 97% identity to FusA[ B. cenocepacia J2315][accession number CAR53040]. New evidence reference (PMID): 17187664.
|
Literature review. Based on article by Sokol, P. A. University of Calgary Health Sciences Centre, Calgary, Alberta.
|
Sep 15, 2008 |
Bcenmc03_5576
|
Burkholderia cenocepacia
MC0-3 |
New gene name: cepR. New product name: transcriptional regulator CepR. New product name confidence: Class 1. New homology: 98% identity to CepR[B. cepacia K56-2]. New evidence reference (PMID): 11402012.
|
Literature review. Based on article by Sokol, P. A. University of Calgary Health Sciences Centre, Calgary, Alberta.
|
Sep 15, 2008 |
Bcep1808_0749
|
Burkholderia vietnamiensis
G4 |
New gene name: caiA. New product name confidence: Class 2. New homology: 94% identity to CaiA[B. cenocepacia J2315][accession number CAR53514.1]. New evidence reference (PMID): 17187664.
|
Literature review. Based on article by Sokol, P. A. University of Calgary Health Sciences Centre, Calgary, Alberta.
|
Sep 15, 2008 |
Bcep1808_2605
|
Burkholderia vietnamiensis
G4 |
New gene name: fusA. New product name confidence: Class 2. New homology: 96% identity to FusA[ B. cenocepacia J2315][accession number CAR53040]. New evidence reference (PMID): 17187664.
|
Literature review. Based on article by Sokol, P. A. University of Calgary Health Sciences Centre, Calgary, Alberta.
|
Sep 15, 2008 |
Bcep1808_4001
|
Burkholderia vietnamiensis
G4 |
New gene name: bviI. New product name: acyl-homoserine lactone synthase BviI. New product name confidence: Class 1. New evidence reference (PMID): 17277056.
|
Literature review. Based on article by Sokol, P. A. University of Calgary Health Sciences Centre, Calgary, Alberta.
|
Sep 15, 2008 |
Bcep1808_5260
|
Burkholderia vietnamiensis
G4 |
New gene name: cepR. New product name: transcriptional regulator CepR. New product name confidence: Class 1. New homology: 94% identity to CepR[B. cepacia K56-2]. New evidence reference (PMID): 11402012.
|
Literature review. Based on article by Sokol, P. A. University of Calgary Health Sciences Centre, Calgary, Alberta.
|
Sep 15, 2008 |
Bcep1808_5262
|
Burkholderia vietnamiensis
G4 |
New gene name: cepI. New product name: acyl-homoserine lactone synthase CepI. New product name confidence: Class 1. New evidence reference (PMID): 17277056.
|
Literature review. Based on article by Sokol, P. A. University of Calgary Health Sciences Centre, Calgary, Alberta.
|
Sep 15, 2008 |
Bcep18194_A3906
|
|
New gene name: caiA. New product name confidence: Class 2. New homology: 95% identity to CaiA[B. cenocepacia J2315][accession number CAR53514.1]. New evidence reference (PMID): 17187664.
|
Literature review. Based on article by Sokol, P. A. University of Calgary Health Sciences Centre, Calgary, Alberta.
|
Sep 15, 2008 |
Bcep18194_A5860
|
|
New gene name: fusA. New product name confidence: Class 2. New homology: 94% identity to FusA[ B. cenocepacia J2315][accession number CAR53040]. New evidence reference (PMID): 17187664.
|
Literature review. Based on article by Sokol, P. A. University of Calgary Health Sciences Centre, Calgary, Alberta.
|
Sep 15, 2008 |
Bamb_0694
|
|
New gene name: caiA. New product name confidence: Class 2. New homology: 94% identity to CaiA[B. cenocepacia J2315][accession number CAR53514.1]. New evidence reference (PMID): 17187664.
|
Literature review. Based on article by Sokol, P. A. University of Calgary Health Sciences Centre, Calgary, Alberta.
|
Sep 15, 2008 |
Bamb_2576
|
|
New gene name: fusA. New product name confidence: Class 2. New homology: 96% identity to FusA[ B. cenocepacia J2315][accession number CAR53040]. New evidence reference (PMID): 17187664.
|
Literature review. Based on article by Sokol, P. A. University of Calgary Health Sciences Centre, Calgary, Alberta.
|
Sep 15, 2008 |
Bcen_3302
|
|
New gene name: zmpB. New product name: zinc metalloprotease ZmpB. New product name confidence: Class 1. New subcellular localization: Extracellular. New subcellular localization confidence: Class 1. New homology: 81% identity to ZmpB[B. cenocepacia J2315]. New evidence reference (PMID): 16790782.
|
Literature review. Based on article by Sokol, P. A. University of Calgary, Calgary, Alberta.
|
Sep 15, 2008 |
Bcen2424_5066
|
|
New gene name: zmpB. New product name: zinc metalloprotease ZmpB. New product name confidence: Class 1. New subcellular localization: Extracellular. New subcellular localization confidence: Class 1. New homology: 81% identity to ZmpB[B. cenocepacia J2315]. New evidence reference (PMID): 16790782.
|
Literature review. Based on article by Sokol, P. A. University of Calgary, Calgary, Alberta.
|
Sep 15, 2008 |
Bcep18194_B0597
|
|
New gene name: zmpB. New product name: zinc metalloprotease ZmpB. New product name confidence: Class 1. New subcellular localization: Extracellular. New subcellular localization confidence: Class . New homology: 79% identity to ZmpB[B. cenocepacia J2315]. New evidence reference (PMID): 16790782.
|
Literature review. Based on article by Sokol, P. A. University of Calgary, Calgary, Alberta.
|
Sep 15, 2008 |
Bamb_4475
|
|
New gene name: zmpB. New product name: zinc metalloprotease ZmpB. New product name confidence: Class 1. New subcellular localization: Extracellular. New subcellular localization confidence: Class 1. New homology: 77% identity to ZmpB[B. cenocepacia J2315]. New evidence reference (PMID): 16790782.
|
Literature review. Based on article by Sokol, P. A. University of Calgary, Calgary, Alberta.
|
Sep 15, 2008 |
Bcen_1823
|
|
New gene name: sodC. New product name: superoxide dismutase, copper/zinc binding SodC. New product name confidence: Class 1. New subcellular localization confidence: Class 1. New evidence reference (PMID): 17325048.
|
Literature review. Based on article by Valvano, M. A. University of Western Ontario, London, Ontario.
|
Sep 15, 2008 |
Bcen_2177
|
|
New gene name: rpoN. New product name confidence: Class 1. New homology: 91% identity to RpoN [B. cenocepacia J2315]. New evidence reference (PMID): 18195023.
|
Literature review. Based on article by Valvano, M. A. University of Western Ontario, London, Ontario.
|
Sep 15, 2008 |
Bcen_2785
|
|
New gene name: hppD. New product name: 4-hydroxyphenylpyruvic acid dioxygenase HppD. New product name confidence: Class 1. New homology: 99% identity to HppD [B. cenocepacia J2315]. New evidence reference (PMID): 17933889.
|
Literature review. Based on article by Valvano, M. A. University of Western Ontario, London, Ontario.
|
Sep 15, 2008 |
Bcen_3644
|
|
New gene name: mgtC. New homology: 94% identity to MgtC [B. cenocepacia J2315]. New evidence reference (PMID): 16988222.
|
Literature review. Based on article by Valvano, M. A. University of Western Ontario, London, Ontario.
|
Sep 15, 2008 |
Bcen2424_0321
|
|
New gene name: hppD. New product name: 4-hydroxyphenylpyruvic acid dioxygenase HppD. New product name confidence: Class 1. New homology: 99% identity to HppD [B. cenocepacia J2315]. New evidence reference (PMID): 17933889.
|
Literature review. Based on article by Valvano, M. A. University of Western Ontario, London, Ontario.
|
Sep 15, 2008 |
Bcen2424_2434
|
|
New gene name: sodC. New product name: superoxide dismutase, copper/zinc binding SodC. New product name confidence: Class 1. New subcellular localization confidence: Class 1. New evidence reference (PMID): 17325048.
|
Literature review. Based on article by Valvano, M. A. University of Western Ontario, London, Ontario.
|
Sep 15, 2008 |
Bcen2424_2791
|
|
New gene name: rpoN. New product name confidence: Class 1. New homology: 91% identity to RpoN [B. cenocepacia J2315]. New evidence reference (PMID): 18195023.
|
Literature review. Based on article by Valvano, M. A. University of Western Ontario, London, Ontario.
|
Sep 15, 2008 |
Bcen2424_4723
|
|
New gene name: mgtC. New homology: 94% identity to MgtC [B. cenocepacia J2315]. New evidence reference (PMID): 16988222.
|
Literature review. Based on article by Valvano, M. A. University of Western Ontario, London, Ontario.
|
Sep 15, 2008 |
Bcenmc03_0301
|
Burkholderia cenocepacia
MC0-3 |
New gene name: hppD. New product name: 4-hydroxyphenylpyruvic acid dioxygenase HppD. New product name confidence: Class 1. New homology: 99% identity to HppD [B. cenocepacia J2315]. New evidence reference (PMID): 17933889.
|
Literature review. Based on article by Valvano, M. A. University of Western Ontario, London, Ontario.
|
Sep 15, 2008 |
Bcenmc03_5577
|
Burkholderia cenocepacia
MC0-3 |
New gene name: mgtC. New homology: 94% identity to MgtC [B. cenocepacia J2315]. New evidence reference (PMID): 16988222.
|
Literature review. Based on article by Valvano, M. A. University of Western Ontario, London, Ontario.
|
Sep 15, 2008 |
Bcep1808_0303
|
Burkholderia vietnamiensis
G4 |
New gene name: hppD. New product name: 4-hydroxyphenylpyruvic acid dioxygenase HppD. New product name confidence: Class 1. New homology: 96% identity to HppD [B. cenocepacia J2315]. New evidence reference (PMID): 17933889.
|
Literature review. Based on article by Valvano, M. A. University of Western Ontario, London, Ontario.
|
Sep 15, 2008 |
Bcep1808_2896
|
Burkholderia vietnamiensis
G4 |
New product name confidence: Class 1. New homology: 89% identity to RpoN [B. cenocepacia J2315]. New evidence reference (PMID): 18195023.
|
Literature review. Based on article by Valvano, M. A. University of Western Ontario, London, Ontario.
|
Sep 15, 2008 |
Bcep1808_5259
|
Burkholderia vietnamiensis
G4 |
New gene name: mgtC. New homology: 91% identity to MgtC [B. cenocepacia J2315]. New evidence reference (PMID): 16988222.
|
Literature review. Based on article by Valvano, M. A. University of Western Ontario, London, Ontario.
|
Sep 15, 2008 |
Bcep18194_A3420
|
|
New gene name: hppD. New product name: 4-hydroxyphenylpyruvic acid dioxygenase HppD. New product name confidence: Class 1. New homology: 97% identity to HppD [B. cenocepacia J2315]. New evidence reference (PMID): 17933889.
|
Literature review. Based on article by Valvano, M. A. University of Western Ontario, London, Ontario.
|
Sep 15, 2008 |
Bcep18194_A5765
|
|
New gene name: sodC. New product name: superoxide dismutase, copper/zinc binding SodC. New product name confidence: Class 1. New subcellular localization confidence: Class 1. New evidence reference (PMID): 17325048.
|
Literature review. Based on article by Valvano, M. A. University of Western Ontario, London, Ontario.
|
Sep 15, 2008 |
Bcep18194_A6121
|
|
New gene name: rpoN. New product name confidence: Class 1. New homology: 91% identity to RpoN [B. cenocepacia J2315]. New evidence reference (PMID): 18195023.
|
Literature review. Based on article by Valvano, M. A. University of Western Ontario, London, Ontario.
|
Sep 15, 2008 |
Bcep18194_B1053
|
|
New gene name: mgtC. New homology: 92% identity to MgtC [B. cenocepacia J2315]. New evidence reference (PMID): 16988222.
|
Literature review. Based on article by Valvano, M. A. University of Western Ontario, London, Ontario.
|
Sep 15, 2008 |
Bamb_0240
|
|
New gene name: hppD. New product name: 4-hydroxyphenylpyruvic acid dioxygenase HppD. New product name confidence: Class 1. New homology: 96% identity to HppD [B. cenocepacia J2315]. New evidence reference (PMID): 17933889.
|
Literature review. Based on article by Valvano, M. A. University of Western Ontario, London, Ontario.
|
Sep 15, 2008 |
Bamb_2851
|
|
New gene name: rpoN. New product name confidence: Class 1. New homology: 89% identity to RpoN [B. cenocepacia J2315]. New evidence reference (PMID): 18195023.
|
Literature review. Based on article by Valvano, M. A. University of Western Ontario, London, Ontario.
|
Sep 15, 2008 |
Bamb_4115
|
|
New gene name: mgtC. New homology: 91% identity to MgtC [B. cenocepacia J2315]. New evidence reference (PMID): 16988222.
|
Literature review. Based on article by Valvano, M. A. University of Western Ontario, London, Ontario.
|
Sep 15, 2008 |
Bcen_2003
|
|
New gene name: coxG. New product name confidence: Class 2. New homology: 82% identity to CoxG[B. cenocepacia j2315]. New evidence reference (PMID): 17220310.
|
Literature review. Based on article by Valvano, M. A. University of Western Ontario, Ontario.
|
Sep 15, 2008 |
Bcen_2006
|
|
New gene name: htrA. New product name: HtrA protease. New product name confidence: Class 2. New subcellular localization confidence: Class 2. New homology: 92% identity to HtrA [B. cenocepacia J2315]. New evidence reference (PMID): 17220310.
|
Literature review. Based on article by Valvano, M. A. University of Western Ontario, Ontario.
|
Sep 15, 2008 |
Bcen2424_2613
|
|
New gene name: coxG. New product name confidence: Class 2. New homology: 82% identity to CoxG[B. cenocepacia J2315]. New evidence reference (PMID): 17220310.
|
Literature review. Based on article by Valvano, M. A. University of Western Ontario, Ontario.
|
Sep 15, 2008 |
Bcen2424_2616
|
|
New gene name: htrA. New product name: HtrA protease. New product name confidence: Class 2. New subcellular localization confidence: Class 2. New homology: 92% identity to HtrA [B. cenocepacia J2315]. New evidence reference (PMID): 17220310.
|
Literature review. Based on article by Valvano, M. A. University of Western Ontario, Ontario.
|
Sep 15, 2008 |
Bcenmc03_2642
|
Burkholderia cenocepacia
MC0-3 |
New gene name: coxG. New product name confidence: Class 2. New homology: 81% identity to CoxG[B. cenocepacia J2315]. New evidence reference (PMID): 17220310.
|
Literature review. Based on article by Valvano, M. A. University of Western Ontario, Ontario.
|
Sep 15, 2008 |
Bcenmc03_2645
|
Burkholderia cenocepacia
MC0-3 |
New gene name: htrA. New product name: HtrA protease. New product name confidence: Class 2. New subcellular localization confidence: Class 2. New homology: 92% identity to HtrA [B. cenocepacia J2315]. New evidence reference (PMID): 17220310.
|
Literature review. Based on article by Valvano, M. A. University of Western Ontario, Ontario.
|
Sep 15, 2008 |
Bcep1808_2728
|
Burkholderia vietnamiensis
G4 |
New gene name: coxG. New product name confidence: Class 2. New homology: 68% identity to CoxG[B. cenocepacia J2315]. New evidence reference (PMID): 17220310.
|
Literature review. Based on article by Valvano, M. A. University of Western Ontario, Ontario.
|
Sep 15, 2008 |
Bcep1808_2731
|
Burkholderia vietnamiensis
G4 |
New gene name: htrA. New product name: HtrA protease. New product name confidence: Class 2. New subcellular localization confidence: Class 2. New homology: 89% identity to HtrA [B. cenocepacia J2315]. New evidence reference (PMID): 17220310.
|
Literature review. Based on article by Valvano, M. A. University of Western Ontario, Ontario.
|
Sep 15, 2008 |
Bcep18194_A5944
|
|
New gene name: coxG. New product name confidence: Class 2. New homology: 79% identity to CoxG[B. cenocepacia J2315]. New evidence reference (PMID): 17220310.
|
Literature review. Based on article by Valvano, M. A. University of Western Ontario, Ontario.
|
Sep 15, 2008 |
Bcep18194_A5947
|
|
New gene name: htrA. New product name: HtrA protease. New product name confidence: Class 2. New subcellular localization confidence: Class 2. New homology: 92% identity to HtrA [B. cenocepacia J2315]. New evidence reference (PMID): 17220310.
|
Literature review. Based on article by Valvano, M. A. University of Western Ontario, Ontario.
|
Sep 15, 2008 |
Bamb_2660
|
|
New gene name: coxG. New product name confidence: Class 2. New homology: 76% identity to CoxG[B. cenocepacia J2315]. New evidence reference (PMID): 17220310.
|
Literature review. Based on article by Valvano, M. A. University of Western Ontario, Ontario.
|
Sep 15, 2008 |
Bamb_2663
|
|
New gene name: htrA. New product name: HtrA protease. New product name confidence: Class 2. New subcellular localization confidence: Class 2. New homology: 89% identity to HtrA [B. cenocepacia J2315]. New evidence reference (PMID): 17220310.
|
Literature review. Based on article by Valvano, M. A. University of Western Ontario, Ontario.
|
Apr 22, 2009 |
BCAL3378
|
Burkholderia cenocepacia
J2315 |
New product name: ferric uptake regulator Fur. New product name confidence: Class 2. New evidence reference (PMID): 18057135.
|
Literature review. Dennis, J. J. Department of Biological Sciences, University of Alberta, Edmonton, Alberta.
|
Aug 25, 2008 |
Bcenmc03_6383
|
Burkholderia cenocepacia
MC0-3 |
New gene name: aidA. New product name: nematocidal protein AidA. New product name confidence: Class 2. New homology: 55% identity to AidA [Ralstonia solanacearum UW551]. New evidence reference (PMID): 15557647.
|
Literature Review. Eberl, Leo. University Zurich, Zurich, Switzerland
|
Aug 25, 2008 |
Bcen2424_5874
|
|
New gene name: aidA. New product name: nematocidal protein AidA. New product name confidence: Class 2. New homology: 55% identity to AidA [Ralstonia solanacearum UW551]. New evidence reference (PMID): 15557647.
|
Literature Review. Eberl, Leo. University Zurich, Zurich, Switzerland
|
Aug 25, 2008 |
Bcen_5510
|
|
New gene name: aidA. New product name: nematocidal protein AidA. New product name confidence: Class 2. New homology: 55% identity to AidA [Ralstonia solanacearum UW551]. New evidence reference (PMID): 15557647.
|
Literature Review. Eberl, Leo. University Zurich, Zurich, Switzerland
|
Aug 25, 2008 |
Bcep18194_C7212
|
|
New gene name: aidA. New product name: nematocidal protein AidA. New product name confidence: Class 2. New homology: 55% identity to AidA [Ralstonia solanacearum UW551]. New evidence reference (PMID): 15557647.
|
Literature Review. Eberl, Leo. University Zurich, Zurich, Switzerland
|
Apr 10, 2015 |
BURPS668_A2179
|
Burkholderia pseudomallei
668 |
New gene name: bsaM. New product name confidence: Class 2. New PubMed ID: 20951592. Annotation transferred from: Locus Tag:BPSS1547.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 10, 2015 |
BPSL1484
|
Burkholderia pseudomallei
K96243 |
New subcellular localization: Extracellular (1). New subcellular localization evidence code (ECO): ECO:0001119 .New subcellular localization PMID: 25635268 .New PubMed ID: 25635268.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 10, 2015 |
BPSS0974
|
Burkholderia pseudomallei
K96243 |
New subcellular localization: Extracellular (1). New subcellular localization evidence code (ECO): ECO:0001119 .New subcellular localization PMID: 25635268 .New PubMed ID: 25635268.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 30, 2018 |
BCAL2408
|
Burkholderia cenocepacia
J2315 |
New PubMed ID: 19525227. New comment:
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 30, 2018 |
BPSS1830
|
Burkholderia pseudomallei
K96243 |
New gene name: bceF. New product name: tyrosine kinase BceF. New product name confidence: Class 2. New PubMed ID: 17114319. New PubMed ID: 23435894. New PubMed ID: 25486990. New PubMed ID: 26590274. New PubMed ID: 19948863. New comment: Member of the bce-I gene cluster.Annotation transferred from: BGD:Bcep1808_4205.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 30, 2018 |
BPSL3111
|
Burkholderia pseudomallei
K96243 |
New gene name: tssL-1. New product name: type VI secretion system protein TssL-1. New product name confidence: Class 2. New PubMed ID: 17660433. New PubMed ID: 22007185. New PubMed ID: 17555434. New comment: Gene is part of a cluster known as the type VI secretion system gene cluster tss-1 used in much of the early P. pseudomallei literature (PMID:17660433) but later referred to as T6SS-1 cluster later (PMID:22007185)
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 30, 2018 |
BPSL1105
|
Burkholderia pseudomallei
K96243 |
New PubMed ID: 25085508. New comment: The T3SS3 and T6SS1 genes are coordinately and hierarchically regulated by BspR (PMID:20345664)
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 10, 2015 |
BURPS1710b_A058
|
Burkholderia pseudomallei
1710b |
New gene name: bsaM. New product name confidence: Class 2. New PubMed ID: 20951592. Annotation transferred from: Locus Tag:BPSS1547.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 10, 2015 |
BPSL1491
|
Burkholderia pseudomallei
K96243 |
New subcellular localization: Extracellular (1). New subcellular localization evidence code (ECO): ECO:0001119 .New subcellular localization PMID: 25635268 .New PubMed ID: 25635268.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 10, 2015 |
BPSS1065
|
Burkholderia pseudomallei
K96243 |
New subcellular localization: Extracellular (1). New subcellular localization evidence code (ECO): ECO:0001119 .New subcellular localization PMID: 25635268 .New PubMed ID: 25635268.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 30, 2018 |
BCAL2409
|
Burkholderia cenocepacia
J2315 |
New PubMed ID: 19525227. New comment:
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|