Log of Annotation Updates

66 annotation updates returned
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Date Locus Tag Strain Description Submitter
Apr 20, 2020 BCAM0219 Burkholderia cenocepacia J2315 New product name: trimeric autotransporter adhesin. New product name confidence: Class 2. New PMIDs: 22919579, 20019083. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 20, 2020 WQ49_RS20325 Burkholderia cenocepacia K56-2 New product name: trimeric autotransporter adhesin. New product name confidence: Class 2. New PMIDs: 22919579, 20019083. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 20, 2020 BCAM0223 Burkholderia cenocepacia J2315 New product name: vitronectin-binding trimeric autotransporter adhesin. New product name confidence: Class 1. New comment: A BCAM0223::Tp mutant was deficient in hemagglutination, affected in adherence to vitronectin and in biofilm formation and showed attenuated virulence in the Galleria mellonella model of infection. . New PMIDs: 22919579, 22848588, 20019083. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 20, 2020 WQ49_RS20305 Burkholderia cenocepacia K56-2 New product name: vitronectin-binding trimeric autotransporter adhesin. New product name confidence: Class 1. New comment: A BCAM0223::Tp mutant was deficient in hemagglutination, affected in adherence to vitronectin and in biofilm formation and showed attenuated virulence in the Galleria mellonella model of infection. . New PMIDs: 22919579, 22848588, 20019083. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 20, 2020 BCAM0224 Burkholderia cenocepacia J2315 New product name: collagen type 1-binding trimeric autotransporter adhesin. New product name confidence: Class 1. New comment: BCAM0224 is a trimeric autotransporter adhesin required for cell adhesion and virulence (PMID:20019083). New PMIDs: 22919579, 20019083. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 20, 2020 BCAM2418 Burkholderia cenocepacia J2315 New product name: trimeric autotransporter adhesin. New product name confidence: Class 1. New comment: Comparative DNA sequence analysis of BCAM2418 genes (structural and promoter regions) of various B. cenocepacia isolates revealed that their lengths greatly vary according to the number of repetitive elements (PMID:32097539). New PMIDs: 22919579, 32097539. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 20, 2020 BURCENK562V_RS15440 Burkholderia cenocepacia K56-2Valvano New product name: trimeric autotransporter adhesin. New product name confidence: Class 1. New PMIDs: 22919579, 32097539. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 20, 2020 WQ49_RS07805 Burkholderia cenocepacia K56-2 New product name: trimeric autotransporter adhesin. New product name confidence: Class 1. New PMIDs: 22919579, 32097539. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 20, 2020 BCAM1115 Burkholderia cenocepacia J2315 New product name: trimeric autotransporter adhesin. New product name confidence: Class 2. New PMID: 22919579. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 20, 2020 BURCENK562V_RS08875 Burkholderia cenocepacia K56-2Valvano New product name: trimeric autotransporter adhesin. New product name confidence: Class 2. New PMID: 22919579. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 20, 2020 WQ49_RS15905 Burkholderia cenocepacia K56-2 New product name: trimeric autotransporter adhesin. New product name confidence: Class 2. New PMID: 22919579. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 20, 2020 BCAS0236 Burkholderia cenocepacia J2315 New product name: trimeric autotransporter adhesin. New product name confidence: Class 2. New PMID: 22919579. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 20, 2020 WQ49_RS10080 Burkholderia cenocepacia K56-2 New product name: trimeric autotransporter adhesin. New product name confidence: Class 2. New PMID: 22919579. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 20, 2020 BCAS0335 Burkholderia cenocepacia J2315 New product name: trimeric autotransporter adhesin. New product name confidence: Class 2. New PMID: 22919579. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 20, 2020 WQ49_RS09590 Burkholderia cenocepacia K56-2 New product name: trimeric autotransporter adhesin. New product name confidence: Class 2. New PMID: 22919579. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 20, 2020 BCAL0323 Burkholderia cenocepacia J2315 New product name confidence: Class 2. New comment: Required for growth in the presence of 20__M CuSO4 (PMID:32090500). New PMID: 32090500. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 20, 2020 BCAL0471 Burkholderia cenocepacia J2315 New comment: Required for growth in the presence of 20__M CuSO4 (PMID:32090500). New PMID: 32090500. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 20, 2020 BCAL2733 Burkholderia cenocepacia J2315 New gene name: cueO. New product name: CueO. New product name confidence: Class 2. New PMID: 32090500. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 20, 2020 BCAL2309 Burkholderia cenocepacia J2315 New gene name: cueR. New product name: CueR. New product name confidence: Class 2. Name transferred from: UniProtKB:P0A9G4. New PMID: 32090500. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 20, 2020 BCAM0442 Burkholderia cenocepacia J2315 New gene name: copS. New product name: CopS. New product name confidence: Class 2. Name transferred from: UniProtKB:Q47457. New PMID: 11004187. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 20, 2020 BCAM0443 Burkholderia cenocepacia J2315 New gene name: copR. New product name: CopR. New product name confidence: Class 2. Name transferred from: UniProtKB:Q47456. New PMID: 11004187. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 20, 2020 BCAM0448 Burkholderia cenocepacia J2315 New gene name: cusF. New product name: CusF. New product name confidence: Class 2. New PMID: 32090500. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 20, 2020 BCAM0449 Burkholderia cenocepacia J2315 New gene name: copC. New product name: CopC. New product name confidence: Class 2. New PMID: 32090500. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 20, 2020 BCAM0450 Burkholderia cenocepacia J2315 New gene name: copD. New product name: CopD. New product name confidence: Class 2. New PMID: 32090500. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 20, 2020 I35_RS29310 Burkholderia cenocepacia H111 New gene name: copA. New product name: Copper-exporting P-type ATPase, CopA. New product name confidence: Class 2. Name transferred from: UniProtKB:Q59385. New comment: Required for growth in the presence of 20__M CuSO4 (PMID:32090500). New PMIDs: 32090500, 12832075. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 20, 2020 I35_RS01625 Burkholderia cenocepacia H111 New product name confidence: Class 2. New comment: Required for growth in the presence of 20__M CuSO4 (PMID:32090500). New PMID: 32090500. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 20, 2020 I35_RS15965 Burkholderia cenocepacia H111 New comment: Required for growth in the presence of 20__M CuSO4 (PMID:32090500). New PMID: 32090500. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 20, 2020 I35_RS12975 Burkholderia cenocepacia H111 New gene name: cueO. New product name: CueO. New product name confidence: Class 2. New PMID: 32090500. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 20, 2020 I35_RS11185 Burkholderia cenocepacia H111 New gene name: cueR. New product name: CueR. New product name confidence: Class 2. Name transferred from: UniProtKB:P0A9G4. New PMID: 32090500. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 20, 2020 I35_RS18295 Burkholderia cenocepacia H111 New gene name: copS. New product name: CopS. New product name confidence: Class 2. Name transferred from: UniProtKB:Q47457. New PMID: 11004187. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 20, 2020 I35_RS18300 Burkholderia cenocepacia H111 New gene name: copR. New product name: CopR. New product name confidence: Class 2. Name transferred from: UniProtKB:Q47456. New PMID: 11004187. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 20, 2020 I35_RS18325 Burkholderia cenocepacia H111 New gene name: cusF. New product name: CusF. New product name confidence: Class 2. New PMID: 32090500. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 20, 2020 I35_RS18330 Burkholderia cenocepacia H111 New gene name: copC. New product name: CopC. New product name confidence: Class 2. New PMID: 32090500. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 20, 2020 I35_RS18335 Burkholderia cenocepacia H111 New gene name: copD. New product name confidence: Class 2. New PMID: 32090500. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 20, 2020 BCAL2200 Burkholderia cenocepacia J2315 New gene name: bptpA. New product name: Burkholderia phosphotyrosine phosphatase, BPtpA. New product name synonym: Low molecular weight protein tyrosine phosphatase, class II.I. New product name confidence: Class 1. New PMID: 31978399. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 20, 2020 BURCENK562V_RS20790 Burkholderia cenocepacia K56-2Valvano New gene name: bptpA. New product name: Burkholderia phosphotyrosine phosphatase, BPtpA. New product name synonym: Low molecular weight protein tyrosine phosphatase, class II.I. New product name confidence: Class 1. New PMID: 31978399. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 20, 2020 QU43_RS53446 Burkholderia cenocepacia J2315 New gene name: bdhR1. New gene name synonym: ncS27. New product name: Burkholderia double-hairpin sRNA regulator bdhR1. New product name confidence: Class 1. New PMID: 31464662. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 20, 2020 QU43_RS64696 Burkholderia cenocepacia J2315 New PMID: 29359187. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 20, 2020 BCAS0208 Burkholderia cenocepacia J2315 New PMID: 30513124. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 20, 2020 BCAS0225 Burkholderia cenocepacia J2315 New PMID: 30513124. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 20, 2020 Bmul_3689 Burkholderia multivorans ATCC 17616 New gene name: penA. New product name: class A beta-lactamase, PenA. New product name confidence: Class 1. New comment: B. multivorans PenA is an inhibitor-resistant carbapenemase, whereas the B. pseudomallei PenA is an extended spectrum beta-lactamase (PMID:27620956). New PMID: 30012762. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 20, 2020 Bmul_6008 Burkholderia multivorans ATCC 17616 New gene name: ampC1. New gene name synonym: ampC. New product name: class C beta-lactamase. New product name confidence: Class 1. New comment: AmpC1 from B. multivorans ATCC 17616 possesses a narrow spectrum, and the contribution of AmpC1 to _-lactam resistance appears to be negligible, yet expression of AmpC1 is regulated by _-lactam inducers including imipenem (PMID:30012762). New PMID: 30012762. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 20, 2020 BMULJ_RS27615 Burkholderia multivorans ATCC 17616 New gene name: ampC1. New gene name synonym: ampC. New product name synonym: AmpC1. New product name confidence: Class 2. New comment: AmpC1 from B. multivorans ATCC 17616 possesses a narrow spectrum, and the contribution of AmpC1 to _-lactam resistance appears to be negligible, yet expression of AmpC1 is regulated by _-lactam inducers including imipenem (PMID:30012762). New PMID: 30012762. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 20, 2020 DM80_RS04270 Burkholderia multivorans DDS 15A-1 New gene name: ampC1. New gene name synonym: ampC. New product name synonym: AmpC1. New product name confidence: Class 2. New PMID: 30012762. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 20, 2020 C6Q10_RS14220 Burkholderia multivorans AU19564 New gene name: ampC2. New gene name synonym: ampC. New product name: class C beta-lactamase. New product name synonym: AmpC2. New product name confidence: Class 2. New PMID: 30012762. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 20, 2020 BP1026B_II1037 Burkholderia pseudomallei 1026b New product name: class A beta-lactamase, PenA. New product name confidence: Class 1. New comment: B. multivorans PenA is an inhibitor-resistant carbapenemase, whereas the B. pseudomallei PenA is an extended spectrum beta-lactamase (PMID:27620956). New PMID: 1718214. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 20, 2020 BCAM2165 Burkholderia cenocepacia J2315 New gene name: penB. New product name confidence: Class 1. New PMIDs: 26416862, 19075063. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 20, 2020 BCAM2166 Burkholderia cenocepacia J2315 New gene name: penR. New PMID: 26416862. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 20, 2020 BCAS0591 Burkholderia cenocepacia J2315 New product name: RND-1 efflux system membrane fusion protein. New product name confidence: Class 1. New comment: Member of rnd-1 operon encoding Resistance-Nodulation-Cell Division (RND) efflux pump RND-1. New PMIDs: 19761586, 25926825. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 20, 2020 BCAS0592 Burkholderia cenocepacia J2315 New product name: RND-1 efflux system transporter protein. New product name confidence: Class 1. New comment: Member of rnd-1 operon encoding Resistance-Nodulation-Cell Division (RND) efflux pump RND-1. New PMIDs: 19761586, 25926825. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 20, 2020 BCAS0593 Burkholderia cenocepacia J2315 New product name: RND-1 efflux system outer membrane protein. New product name confidence: Class 1. New comment: Member of rnd-1 operon encoding Resistance-Nodulation-Cell Division (RND) efflux pump RND-1. New PMIDs: 19761586, 25926825. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 20, 2020 BCAL1674 Burkholderia cenocepacia J2315 New product name: RND-3 efflux system membrane fusion protein. New product name confidence: Class 1. New comment: Member of rnd-3 operon encoding Resistance-Nodulation-Cell Division (RND) efflux pump RND-3; ; Major RND-3 substrates are nalidixic acid, ciprofloxacin, tobramycin, chlorhexidine. New PMIDs: 19761586, 25926825. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 20, 2020 BCAL1675 Burkholderia cenocepacia J2315 New product name: RND-3 efflux system transporter protein. New product name confidence: Class 1. New comment: Member of rnd-3 operon encoding Resistance-Nodulation-Cell Division (RND) efflux pump RND-3; ; Major RND-3 substrates are nalidixic acid, ciprofloxacin, tobramycin, chlorhexidine. New PMIDs: 19761586, 25926825. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 20, 2020 BCAL1676 Burkholderia cenocepacia J2315 New product name: RND-3 efflux system outer membrane protein. New product name confidence: Class 1. New comment: Member of rnd-3 operon encoding Resistance-Nodulation-Cell Division (RND) efflux pump RND-3; ; Major RND-3 substrates are nalidixic acid, ciprofloxacin, tobramycin, chlorhexidine. New PMIDs: 19761586, 25926825. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 20, 2020 BCAL2822 Burkholderia cenocepacia J2315 New product name: RND-4 efflux system membrane fusion protein. New product name confidence: Class 1. New comment: Member of rnd-4 operon encoding Resistance-Nodulation-Cell Division (RND) efflux pump RND-4; Major RND-4 substrates are aztreonam, chloramphenicol, fluoroquinolones, tobramycin. New PMIDs: 19761586, 25926825. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 20, 2020 BCAL2821 Burkholderia cenocepacia J2315 New product name: RND-4 efflux system transporter protein. New product name confidence: Class 1. New comment: Member of rnd-4 operon encoding Resistance-Nodulation-Cell Division (RND) efflux pump RND-4; Major RND-4 substrates are aztreonam, chloramphenicol, fluoroquinolones, tobramycin. New PMIDs: 19761586, 25926825. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 20, 2020 BCAL2820 Burkholderia cenocepacia J2315 New product name: RND-4 efflux system outer membrane protein. New product name confidence: Class 1. New comment: Member of rnd-4 operon encoding Resistance-Nodulation-Cell Division (RND) efflux pump RND-4; Major RND-4 substrates are aztreonam, chloramphenicol, fluoroquinolones, tobramycin. New PMIDs: 19761586, 25926825. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 20, 2020 BCAM2551 Burkholderia cenocepacia J2315 New product name synonym: RND-10 efflux system membrane fusion protein. New product name confidence: Class 1. New comment: Member of ceoAB-opcM (rnd-10) operon encoding Resistance-Nodulation-Cell Division (RND) efflux pump (RND-10); Major substrates of RND-10 are chloramphenicol, flouroquinolones and trimethoprim. New PMIDs: 14755343, 25926825. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 20, 2020 BCAM2550 Burkholderia cenocepacia J2315 New product name synonym: RND-10 efflux system transporter protein. New product name confidence: Class 1. New comment: Member of ceoAB-opcM (rnd-10) operon encoding Resistance-Nodulation-Cell Division (RND) efflux pump (RND-10); Major substrates of RND-10 are chloramphenicol, flouroquinolones and trimethoprim. New PMIDs: 14755343, 25926825. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 20, 2020 BCAM2449 Burkholderia cenocepacia J2315 New product name synonym: RND-10 efflux system outer membrane protein. New product name confidence: Class 1. New comment: Member of ceoAB-opcM (rnd-10) operon encoding Resistance-Nodulation-Cell Division (RND) efflux pump (RND-10); Major substrates of RND-10 are chloramphenicol, flouroquinolones and trimethoprim. New PMIDs: 14755343, 25926825. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 20, 2020 BCAM0925 Burkholderia cenocepacia J2315 New product name: RND-8 efflux system membrane fusion protein. New product name confidence: Class 1. New comment: Member of rnd-8 operon encoding Resistance-Nodulation-Cell Division (RND) efflux pump RND-8; Major RND-8 substrate is tobramycin (in biofilm grown cells). New PMIDs: 25267676, 25926825. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 20, 2020 BCAM0926 Burkholderia cenocepacia J2315 New product name: RND-8 efflux system transporter protein. New product name confidence: Class 1. New comment: Member of rnd-8 operon encoding Resistance-Nodulation-Cell Division (RND) efflux pump RND-8; Major RND-8 substrate is tobramycin (in biofilm grown cells). New PMIDs: 25267676, 25926825. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 20, 2020 BCAM0927 Burkholderia cenocepacia J2315 New product name: RND-8 efflux system outer membrane protein. New product name confidence: Class 1. New comment: Member of rnd-8 operon encoding Resistance-Nodulation-Cell Division (RND) efflux pump RND-8; Major RND-8 substrate is tobramycin (in biofilm grown cells). New PMIDs: 25267676, 25926825. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 20, 2020 BCAM1945 Burkholderia cenocepacia J2315 New product name: RND-9 efflux system membrane fusion protein. New product name confidence: Class 1. New comment: Member of rnd-9 operon encoding Resistance-Nodulation-Cell Division (RND) efflux pump RND-9; Major RND-9 substrate is tobramycin, chlorhexidine (in biofilm grown cells). New PMIDs: 25267676, 25926825. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 20, 2020 BCAM1946 Burkholderia cenocepacia J2315 New product name: RND-9 efflux system transporter protein. New product name confidence: Class 1. New comment: Member of rnd-9 operon encoding Resistance-Nodulation-Cell Division (RND) efflux pump RND-9; Major RND-9 substrate is tobramycin, chlorhexidine (in biofilm grown cells). New PMIDs: 25267676, 25926825. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 20, 2020 BCAM1947 Burkholderia cenocepacia J2315 New product name: RND-9 efflux system outer membrane protein. New product name confidence: Class 1. New comment: Member of rnd-9 operon encoding Resistance-Nodulation-Cell Division (RND) efflux pump RND-9; Major RND-9 substrate is tobramycin, chlorhexidine (in biofilm grown cells). New PMIDs: 25267676, 25926825. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
66 annotation updates returned