Strain Overview | |
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Organism Name | Burkholderia ambifaria AMMD |
Species | Burkholderia ambifaria |
Strain | AMMD |
Description/Title | Microbe sample Burkholderia ambifaria AMMD |
Annotated Genes | 6530 |
Partial Genes | 34 |
Host Information | |
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Host Species Taxonomic Name |
Geographic Location | |
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Location Name | USA: Wisconsin |
Isolation Source | Pea rhizosphere |
Sample Provider | |
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Name | Shannon Johnson |
shannonj@lanl.gov | |
Institution | Los Alamos National Laboratory |
Date Collected | 1985 |
Database | Scheme | Sequence Type | Alleles | |||||||
---|---|---|---|---|---|---|---|---|---|---|
PubMLST | bcc | 77 |
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Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst). |
Assembly | |
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Assembly DB |
RefSeq
|
Assembly Accession | Assembly Status | latest |
Scaffolds | |
Contigs | |
Contig N50 | |
Assembly Level | Complete Genome |
Percent GC |
Cross-References | |
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NCBI BioSample Accession | SAMN03140296 |
NCBI Taxonomy ID | 339670 |
NCBI Bioprojects |
Related Data | |
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Additional Genome Project Info | |
Sequencing Information | |
Genome Assembly Information |
Feature | Count |
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gene | 6530 |
CDS | 6441 |
tRNA | 69 |
pseudo | 54 |
rRNA | 18 |
ncRNA | 1 |
Localization | Count |
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Cytoplasmic | 2886 |
Cytoplasmic Membrane | 1378 |
Periplasmic | 223 |
Outer Membrane | 154 |
Extracellular | 88 |
Unknown | 1543 |
Unknown (This protein may have multiple localization sites) | 200 |
Flagellar | 19 |
Fimbrial | 8 |
T3SS | 4 |
Name | Length | GC | |
---|---|---|---|
Burkholderia ambifaria AMMD chromosome 1, complete sequence. | 3556555 bp | 66.9% |
Replicon details
|
Burkholderia ambifaria AMMD chromosome 2, complete sequence. | 2646970 bp | 66.8% |
Replicon details
|
Burkholderia ambifaria AMMD chromosome 3, complete sequence. | 1281472 bp | 66.5% |
Replicon details
|
Burkholderia ambifaria AMMD plasmid pBII_1, complete sequence. | 43581 bp | 65.8% |
Replicon details
|
Genomic | ORF DNA | Intergenic | Amino Acid |
TSV | CSV | GBK | EMBL | GFF3 | GFF3 + sequence | GTF |