Strain Overview | |
---|---|
Organism Name | Burkholderia cenocepacia H111 |
Species | Burkholderia cenocepacia |
Strain | H111 |
Description/Title | Non-tumor DNA sample from Blood of a human male participant in the dbGaP study "Sequencing of Targeted Genomic Regions Associated with Smoking" |
Annotated Genes | 6815 |
Partial Genes | 22 |
Host Information | |
---|---|
Host Species Taxonomic Name | Homo sapiens |
Host Species Common Name | human |
Host Species Taxonomy ID | 9606 |
Host Species Disease | cystic fibrosis |
Geographic Location | |
---|---|
Location Name | Germany: Hannover |
Isolation Source | sputum |
Sample Provider | |
---|---|
Name | |
Institution | European Bioinformatics Institute |
Date Collected | 1993 |
Database | Scheme | Sequence Type | Alleles | |||||||
---|---|---|---|---|---|---|---|---|---|---|
PubMLST | bcc | 1506 |
|
|||||||
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst). |
Assembly | |
---|---|
Assembly DB |
RefSeq
|
Assembly Accession | Assembly Status | latest |
Scaffolds | |
Contigs | |
Contig N50 | |
Assembly Level | Complete Genome |
Percent GC |
Cross-References | |
---|---|
NCBI BioSample Accession | SAMEA3138403 |
NCBI Taxonomy ID | 9606 |
NCBI Bioprojects |
Related Data | |
---|---|
Additional Genome Project Info | |
Sequencing Information | |
Genome Assembly Information |
Genome Browsers* | |
---|---|
Burkholderia cenocepacia H111 chromosome 1 complete genome. | |
Burkholderia cenocepacia H111 chromosome 2, complete genome. | |
Burkholderia cenocepacia H111 chromosome 3, complete genome. |
Feature | Count |
---|---|
gene | 6815 |
CDS | 6730 |
tRNA | 65 |
pseudo | 62 |
rRNA | 18 |
ncRNA | 1 |
Localization | Count |
---|---|
Cytoplasmic | 2986 |
Cytoplasmic Membrane | 1460 |
Periplasmic | 216 |
Outer Membrane | 164 |
Extracellular | 89 |
Unknown | 1692 |
Unknown (This protein may have multiple localization sites) | 208 |
Flagellar | 18 |
Fimbrial | 5 |
T3SS | 2 |
Name | Length | GC | |
---|---|---|---|
Burkholderia cenocepacia H111 chromosome 1 complete genome. | 3572953 bp | 67.1% |
Replicon details
|
Burkholderia cenocepacia H111 chromosome 2, complete genome. | 3102677 bp | 67.4% |
Replicon details
|
Burkholderia cenocepacia H111 chromosome 3, complete genome. | 1039263 bp | 67.8% |
Replicon details
|
Genomic | ORF DNA | Intergenic | Amino Acid |
TSV | CSV | GBK | EMBL | GFF3 | GFF3 + sequence | GTF |