Strain Overview | |
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Organism Name | Burkholderia ambifaria FDAARGOS_419 |
Species | Burkholderia ambifaria |
Strain | FDAARGOS_419 |
Description/Title | Pathogen: environmental/food/other sample from Burkholderia ambifaria |
Annotated Genes | 6638 |
Partial Genes | 153 |
Host Information | |
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Host Species Taxonomic Name | Environment |
Host Species Sex | Not Applicable |
Host Species Age | Not Applicable |
Host Species Disease | Not Applicable |
Geographic Location | |
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Isolation Source | environmental |
Latitude/Longitude | Not Applicable |
Sample Provider | |
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Name | USAMRIID |
Heike.Sichtig@fda.hhs.gov | |
Institution | US Food and Drug Administration |
Date Collected |
Database | Scheme | Sequence Type | Alleles | |||||||
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PubMLST | bcc | 77 |
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Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst). |
Assembly | |
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Assembly DB |
RefSeq
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Assembly Accession | Assembly Status | latest |
Scaffolds | |
Contigs | 4 |
Contig N50 | 2646963 |
Assembly Level | Contig |
Percent GC |
Cross-References | |
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NCBI BioSample Accession | SAMN07312463 |
NCBI Taxonomy ID | 152480 |
NCBI Bioprojects |
Related Data | |
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Additional Genome Project Info | |
Sequencing Information | |
Genome Assembly Information |
Name | Length | GC | |
---|---|---|---|
Burkholderia ambifaria strain FDAARGOS_419 pRIID_52.contig.0, whole genome shotgun sequence. | 43581 bp | 65.8% |
Replicon details
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Burkholderia ambifaria strain FDAARGOS_419 pRIID_52.contig.1, whole genome shotgun sequence. | 1281479 bp | 66.5% |
Replicon details
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Burkholderia ambifaria strain FDAARGOS_419 pRIID_52.contig.2, whole genome shotgun sequence. | 2646963 bp | 66.8% |
Replicon details
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Burkholderia ambifaria strain FDAARGOS_419 pRIID_52.contig.3, whole genome shotgun sequence. | 3575335 bp | 66.9% |
Replicon details
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Genomic | ORF DNA | Intergenic | Amino Acid |
TSV | CSV | GBK | EMBL | GFF3 | GFF3 + sequence | GTF |